Array 1 327-5156 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNHR01000267.1 Xanthomonas oryzae pv. oryzae strain 296 scaffold266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 327 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 392 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 456 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 522 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 587 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 654 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 719 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 787 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 853 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 919 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 983 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 1048 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 1115 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 1181 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 1247 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 1315 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 1381 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 1446 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 1511 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 1577 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 1643 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 1708 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 1774 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 1840 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 1905 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 1971 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 2038 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 2103 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 2170 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 2237 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 2301 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 2365 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 2430 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 2496 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 2561 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 2628 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 2694 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 2761 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 2827 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 2891 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 2956 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 3021 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 3088 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 3154 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 3220 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 3284 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 3350 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 3415 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 3481 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 3546 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 3613 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 3678 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 3745 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 3812 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 3878 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 3945 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 4013 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 4078 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 4143 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 4208 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 4273 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4339 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4405 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4470 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4535 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4601 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4667 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4731 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4798 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4863 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 4929 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4994 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 5061 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 5126 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 74 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GATTTTGATGCGCACGATCTGGCAGGTCTGCAATTGGGCGAACATCCGGTCCAGCACACCGGACTTGGCCCAACGGTTAATGCGCGTGTACACCGTATGCCAGTTGCCAAAGCGCTCGGGCAGACCGCGCCATTTGCAGCCATGCTCTGCGACGTAAAGAAGGGCGTTGACTACCTGCAGGTTGGTCATGCTGACATTGCCGCGTTGCAAAGGTAGGCAATGCTCGATGAGTGCAAATTGTGCTGGCGTGATCTCCATGCCCAATAGTTTAATCGCTCGAGACATTAATGTTAACAGGCCCTAGCATGTCACCAAATCCCGAGCGTG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8082-10468 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNHR01000043.1 Xanthomonas oryzae pv. oryzae strain 296 scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8082 31 100.0 34 ............................... CTGCGCGCCATCGACGCCCACAAACCCGCGTTTG 8147 31 100.0 34 ............................... TTCACGGTGACGGTATACGCGCCGCCGGTGTTGT 8212 31 100.0 35 ............................... GCCCAATCCGGTGCGTCTTCCCAAGTCGGTTTCAT 8278 31 100.0 34 ............................... TCCCGCAGGCCTGTCTTTAAATGGTAATGCCTAT 8343 31 100.0 34 ............................... CTCAGTTGGTGGGTGTGTTGCAGTGAGTACAGGC 8408 31 100.0 35 ............................... CATGACAGTCATGACGGGCACAGCTGCCCCAACTG 8474 31 100.0 35 ............................... GACAGAAGCGTAGTAACAGTTGCGCAAGCGGACTC 8540 31 100.0 34 ............................... TAGCCCAGCTGGCTGCAACCGGCGACTTTACTGG 8605 31 100.0 34 ............................... CCTCATACCACGCCGTTGGTGGTGGTAGGGATTT 8670 31 100.0 35 ............................... ACCTGCAAGGACTGGGCCACGATCACACATCCCAC 8736 31 100.0 33 ............................... TTCAGGGTCATACGATGCACACGCATGTCTTTA 8800 31 100.0 33 ............................... AGCAGCGCCGGGTTTGTCCGAGATGATTACCTG 8864 31 100.0 33 ............................... ACATGTCTCTGACCACCACCAGATATTCGCGGG 8928 31 100.0 35 ............................... CCAAAGAGCCGCCCAAGCTGTATCGCCAGACGCAC 8994 31 100.0 35 ............................... TTGTCCAACACCTTGCCGTCGATCGCACGCAGATC 9060 31 100.0 34 ............................... AATCAGCGCGCTGTCGGTACGGCCCGAGCCAATC 9125 31 100.0 35 ............................... AAGACTTTTTGGTACAGGTGCAGGGCGGCCAAAAC 9191 31 100.0 35 ............................... CACTGGCGACTCAAGCACTTGCAGGAGAGCATGCG 9257 31 100.0 34 ............................... GTTTACTTCTGCGATTTTCGCGGTAGGAAGTATG 9322 31 100.0 35 ............................... CTCAAGATTGCAGATTATCCAGCAGAGGTGCGCCA 9388 31 100.0 35 ............................... AAGGGGTCTGCGACGCAGCAGCTCCAAACGCTGTC 9454 31 100.0 35 ............................... AGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGAT 9520 31 100.0 35 ............................... TGTTCTTTACGGTATTTGTAAATTAACTCCTGCAC 9586 31 100.0 34 ............................... AAGGCACAGCAGGAACGCGCGCGCAAGACCGACC 9651 31 100.0 34 ............................... AAATCGATTGCGACCCGTCTAGCATCGTGCCATG 9716 31 100.0 33 ............................... CTCAAGCAACACCCACTGTGCTGCTACTGTGAA 9780 31 100.0 35 ............................... TGGTCTGCTGCTTCTGCCTTAATGGCAGACAGCCT 9846 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 9911 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 9977 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 10043 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 10108 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 10174 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 10240 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 10308 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 10373 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 10438 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : GTTGAAAACTAGGGTCTGTTAACACATCCGAAGCCCATCAACGACCAGAACGAAGCTGAGGAAGCCAAGGAACATGACATCCAGCTTCTCGAAGCGCGTGAAAATCCGTCGGTAGCCCTTCAAGCGACGGAACAGCCTCTCCACTTCGTTGCGCCGCTTGTACATTTCCTTGTCGTACTCCCAAGGATCGACCCGATTGGACTTGGGTGGAACCACCGGCACGAAGCCAAGATCGAGCGCCAACTTGCGGGTTTCATTGTCTTCGTAAGCGCGATCCATCAGCAGATGAACCGGCCGCTCCACTGGCCCCAGGTGTTCAAGCAACGCGCGGCCTGCGGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //