Array 1 520318-519923 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKQG01000003.1 Kitasatospora niigatensis strain DSM 44781 Ga0197501_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 520317 29 100.0 32 ............................. GAGACGATGAGACGCTGCAGTCAGCGTTCGTA 520256 29 100.0 32 ............................. CGTACGCCGAGATGTACGTCCGTCGCCGTAAC 520195 29 100.0 32 ............................. GACTTGAAGGGCACGACGTGGTGCACGATCGG 520134 29 100.0 32 ............................. CAACCGGCTGCCCCATGCACCCGCACGGGGTG 520073 29 100.0 32 ............................. AAGACCATCGCGGACTTCAGCGACGACGAACT 520012 29 100.0 32 ............................. CACGACGAACGGCCGCGGAAGTACCTCGCCAG 519951 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GCCGGCGAAACACCCCCACCAGCACGCACAGGCCACACCGCAAAGCACACCACCCCAAAACCGCGCATCAGACAGCAGACCCTTCGAACTGCGAGAACAACTGCGCGGCTGACCTTGGGAGACCCCGTCCGATCACACTGGCGCCGCCGAGGAGAAGCAACACCCCCGGACCTCACGAACTTCGAACTCTCCATTCACCGCCCGCCAATGGCCGAGAACCCTGCCCGATGTCGTACCGCTGTGGGAACATCCAGCCTCGCTCTACCGGTCCTTGACACCTCCACAGCACCACCAAGCAGGCGGTGAGCCACAGCAGCGGCAGACACCCCCAACCACCGGCCGAACAAACCGGACAGCCACAGCCTCCACCTTCATCTATGCCTTGAAGGTCGATCCTGCTCAGCCAGACGAAAGGAAGGGACGCCATGTCGCTTATGTCCGAATCTCGACAAGTAGCAAATTTCTGCGCCTCTGGCGCATAACACTGCAGGTCAACAAGA # Right flank : GTCATCCGGATCAGCTCGGCGGCCGTGTCGCCGCTTCGTGAAAACTGACCCCCAGGCGCTCTCCGAAAGTTGACCCCTCCTGACTCTTGGAGGGTGCTGAAAGTGGAGGACTGGGCAGAGATACGCAGGCTGCATCGAGCGGAGGGCGTGCCCATCAAGGAGATCGCTCGGCGGCTGGGGGTGGCCCGGAACACGGTGCGGGCCGCATTGAACTCGGACCGGCCGCCGAAGTACGAACGTGCGCCACGCGGGTCCGTGGCGGACGCCTATGAGACGCAGATCCGGTTCCTGCTGAACGAGTGGCCCAAGATGCCCGCCCCGGTAATCGCCGAACGGATCGGCTGGCCGCACTCGATGTCACCGCTGAAGAAGAAGCTGGCCCAGATCCGGCCCGAATACGTGGGCATCGACCCGGTCGACCGGGTGACCTACGAACCGGGCGAGATCACCCAGTGCGACCTGTGGTTCCCAGAGCCAAGAGTGCCGGTCGCACCGGGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 530281-531043 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKQG01000003.1 Kitasatospora niigatensis strain DSM 44781 Ga0197501_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 530281 29 96.6 32 ....................A........ ACCCTCTACCGGGAGACCAAGGCCGGTCGGAT 530342 29 96.6 32 ....................A........ ATCAACATCCCCGGGAACAACGCCAGCGGCGG 530403 29 96.6 32 ....................A........ GGGTACGTGCCGCGCTGGGCAAACGTGGACCA 530464 29 96.6 32 ....................A........ CGGTGCCAGCATCGGAAGATCGGCTGGCAGGG 530525 29 100.0 32 ............................. ACGTTGCGGCTCAGCAGCACGGGGTCACCCTC 530586 29 100.0 32 ............................. GCCTCCGCGCAGCATCCGCAGGTGCGCCGCTC 530647 29 100.0 32 ............................. GACAGCGTCCGACGGCCGGTCAGATCCGGTTG 530708 29 100.0 32 ............................. AACGGCCGTTCGGCCACCGACCGCCGCGATCC 530769 29 100.0 32 ............................. CAGTACACCGTCCCCGTCGCCGAGTTCGGCGA 530830 29 100.0 32 ............................. GGCGCCTTGACTGTGGCGGACCTCCCGATCTC 530891 29 100.0 31 ............................. CCGTGCACAGCCTGCTCGCCGCGGATCAACC 530951 29 96.6 34 ..........T.................. ATTCCGCGCACGGTGGTCGGGGCGTTGATCTCCG G [530968] 531015 29 96.6 0 ...................T......... | ========== ====== ====== ====== ============================= ================================== ================== 13 29 98.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCACGGACAACACGTGGCCTCAGGAGTCAACTACGGAGAGGGCAACTGGTGACCGTCATCGTCCTCACCAACTGCCCCGTCGGACTACGGGGCCTGCTCACCCGCTGGCTCCTCGAGATCTCCGCTGGAGTGTTCATCGGCTCCCCAACTGCACGCGTGCGGGACGTCCTGTGGGCCGAAGTCCGACAGTATGCAGGTCAGGGCCGGGCTCTCCTGATCCACACCTCGAACACGGAACAGGGCTTCACCTTCCACACCCACGATCACGCCTGGAAACCCGTCGACCATGAAGGCCTCACCCTCATCCACCGACCGAACACCAAAGCGACAGCGGCATCCAGTCCTGCGAAGCAAGGTTGGAGCACCGCTTCCAAACTGCGCCGCTTCGGAAAACGATGAACCACTCTCGAAAGAGCCTGGACTTCATGTCCGTTATGCCGGAATCGGCGAAGGTTGCAGTTTCACGCCACACCGATAGGTAAACCCACAGGTCATCAAGA # Right flank : CGCGGAACTCCCAGCCATTGGCGGAAAGCCGCTCTGCTCCCCGCGCCCATCCTGGCCGACCGCCTGCTGCACCGCTGCCCCATCACCGACACCACCCCCGAACAGCACCTCGAACTGCTCTACGCCTACATCCACCACCACGGCTGGACCCAAGGCCGGCTGTGGACCAGCGACGGCGCGGTGTGCATCCTCGGCGCCCAACTGCGCGTCCTAGCCGCCGGCCTGGGCACCGCCCACACCGCCATCCGCGCCCGCCAGCGCCTGGGCAACGCCCTCGGCCGCCTCGGCCAGCCGATCCCCGTCGACCGCTGGAACGACCAGCCCGGCCGGACCGCCACCGACGTCCACCACCTGCTGCGCACCGCCGCCGCCCACCCCTGACCTCGAAGGAGACCACCATGGCCACCAGCGCGCTGCCCGCCACCACGAAGACCGGCCGCCACTACCTGGCGAAGTTTGCCGCCGCCGCCCCCGCTGTCCACGTCTACCGCGACCCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCCCGCGGGAATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //