Array 1 98635-99336 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP063116.1 Haemophilus parainfluenzae strain M1C146_1 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
     98635	    33	  97.0	    34	................................T	AGAAGGGTTCGCAAGTGTTTGCGGAAATATCTAA  	
     98702	    33	  97.0	    32	................................T	TCGTTCTCGAATTAAATTCCGCTCCATTTCAG    	
     98767	    33	  97.0	    34	................................C	TGTACTTTTTGATAACTTGTTACGAAAAAGCCCA  	
     98834	    33	  97.0	    34	................................C	AAAACGGCGATTTTCATACCTGCATTTAATACAG  	
     98901	    33	 100.0	    36	.................................	TTGTTTTCTCCAGTTTTTTCCGCTCTACGCTCAAAA	
     98970	    33	 100.0	    34	.................................	AACTGGCGTGACTGAATTCGCTGAATTTGTCGGC  	
     99037	    33	  97.0	    34	................................T	TTTAATACACCGAGCAAATAAACAATCGCCACAA  	
     99104	    33	  97.0	    34	................................T	TTATCGTGGCGATGATGAAGAGCGAAGAGTGCGG  	
     99171	    33	 100.0	    33	.................................	TAAGTTAAATACGCAGCAACCGCAATCCCTGTA   	
     99237	    33	 100.0	    34	.................................	CTTTACCTCGTACACATAGTTTTATTGCGAATGG  	
     99304	    33	  75.8	     0	......G............GA..C.GC.G..T.	|                                   	
==========	======	======	======	=================================	====================================	==================
        11	    33	  96.2	    34	GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA	                                    	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAATGGGCAAGCGAGATTGCGCCGCATCGCAAAACATTGCTTGGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGGACAAAACCAGCAATAGATGTATTTAAAGACGTACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAATCCTGATGGGATAGCGATCTTCATTTTCTTTAACAATTTGGATTAGTTAATCTATTTGTATAACGGAGGTATGACTGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGA
# Right flank :  AAAACTTAATAAATTTGAATAGTATAATATTTACCTTCCTACTCTATCTCTCAACCCAATTCATACCCAACAACATTCCCCCTTGTTTTTCCCCCTTATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATGATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCTGATGAGCTGATTGCTCGTTACCCTAAAGAAGATCGCTCTTCTTGTCGTTTACTACAACTCAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGACGAAGGCGATTTATTGATTTTTAACAATACGCGCGTAATCCCTGCTCGTATGTTTGGTCGTAAAGCCAGCGGCGGGAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGAACATCATTTCTTAGCGCATATTCGTTCGTCAAAAGCCCCGAAAGAAGGTGCTGAATTATTTTTAGGCGAAGATAAGCTGGGTGAAAATAATGG

# Questionable array : NO	 Score: 5.68
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.30,-3.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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