Array 1 285511-286244 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJV01000001.1 Listeria monocytogenes strain FSL L7-0325 NODE_1_length_1432169_cov_69.843150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 285511 29 96.6 34 ..............A.............. TTCTCTTTTTCTAAAACAGCATATACGCCCGATT 285574 29 96.6 35 ..............A.............. AGGATAGACATTCGATAATTAAATTCGTTATAGCC 285638 29 96.6 36 ..............A.............. AAACCAGATTTCAAAACAACACCTTCACGCATGTAT 285703 29 100.0 36 ............................. GTGATATCCGTTTTACTAACTTCAACATCCCCTTTT 285768 29 100.0 35 ............................. TCGCGATTCATGTAAATCATTCGATACGTTTGTTT 285832 29 96.6 35 ..............A.............. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 285896 29 100.0 34 ............................. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 285959 29 96.6 36 ..................A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 286024 29 100.0 35 ............................. TTATGACTTCATCACCTTCCATGTAACACTATTTT 286088 29 96.6 33 ..........................G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGT 286152 29 93.1 35 ......T.......A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 286216 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 12 29 96.3 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCACCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6338-4917 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJV01000003.1 Listeria monocytogenes strain FSL L7-0325 NODE_3_length_517867_cov_97.579729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6337 36 100.0 30 .................................... TAAATCAAATCCGGCACGGATGTATAAATC 6271 36 100.0 30 .................................... AATTTAACATTATTCTTCTCCCCCTGCTTC 6205 36 100.0 30 .................................... GAGAATGCAAGAATTAATTAATGAGTACAG 6139 36 100.0 30 .................................... ACATATATTGGCAGTTTGCTGTTCCTATTG 6073 36 100.0 29 .................................... TTGTATTTGTTGAACGGCTTGTTAGCAAC 6008 36 100.0 30 .................................... CACCTCACCTTTTTTATCTTCGTAACGCCA 5942 36 100.0 30 .................................... AAAAAACGAACAAGACTTATTAAATCAGTT 5876 36 100.0 30 .................................... ATGTGACTTATATAAAAATACAAGCCGTTA 5810 36 100.0 30 .................................... TAAATATTTCTGATAGATCGCGGCGAAAGC 5744 36 100.0 30 .................................... AACTACAAATGTTTAATCAAATGTTCTTAG 5678 36 100.0 30 .................................... GGCTGAATTGCACACCCTCTATTGCGCTTG 5612 36 100.0 30 .................................... ATTGTAAGTTGAAGATGTTCGAAATCCGAC 5546 36 100.0 30 .................................... TTAAGTGCGTATGCTCCCTTTGCTGCCAGT 5480 36 100.0 30 .................................... CACCAATGACTGCAATTATTACTCCGAACG 5414 36 100.0 30 .................................... ACATATCATTTTTTGCGGTACGTGCGAGTG 5348 36 100.0 30 .................................... TGATTGAACTGTAGCCTTTACACTACTTTT 5282 36 100.0 30 .................................... GCTGTCAACGATTTTTCCATCACGTCTGTT 5216 36 100.0 30 .................................... TTCTAGGTTATCTAGTAAGTTATTAAACAT 5150 36 97.2 30 .......................C............ CGGCTTCAGAACATCTTCAACTTATAATCA 5084 36 100.0 30 .................................... TGACTAATGCACCCATACTTACACCCGCCG 5018 36 97.2 30 .......................C............ CATTAAACGTCGATGTGGCAAAAATGATTA 4952 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATATGAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACCATGAAAAAGACATCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCCTCCTGCTAAACAAATAAAACTCTCTCGCCTACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //