Array 1 322-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLE010000009.1 Enterobacter cloacae complex sp. P3B 1701034349_S78_R1_(paired)_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 321 28 100.0 32 ............................ AGCTGTTCGCCGGTCATTGGTTTATTGGCTGT 261 28 100.0 33 ............................ GGTTGCAGCATAGTGCTTAAGTGCATCAGTTTT 200 28 100.0 32 ............................ TCATGGGGGTGGCCTGACAATGCTGAATTTTT 140 28 100.0 32 ............................ TTGTGAAGCACTATGGCGGTAACTACCAAGGA 80 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGCTTAGAAAGACGAGCGAAACCGCCGATTTTACGGCGTACAGTTCAATGCCGTACAGGCAGCTTAGAAACGCCAGACGTGGGGCGAGCAGGTAAGCGCAATGTTCACTGCCGTACAGGCAGCTTAGAAATTGTCAGTCTGATGAAAATAAAGGGCCAATGCGTTCACTGCCGTACAGGCAGCTTAGAAAAGCATCGAATCCAGCGGCGTGTTAGACGTGGCGTTCACTGCCGTACAGGCAGCTTAGAAATAAGAAGGAGTATTTCCCGCTATACAGCGAAGGTTCACTGCCGTACAGGCAGCTTAGAAAGGTGAATATGTCCCGCCACTGGCCGTGGAAGTGTTCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACAGGCAGCTTAGAAACGCGAGGCCGCCGCAGCTCTTGGGATTAACCC # Right flank : AAAATCGAAGCGAGTGGGAAAAGAACAGTCACAAGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1319-511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLE010000009.1 Enterobacter cloacae complex sp. P3B 1701034349_S78_R1_(paired)_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1318 28 100.0 32 ............................ ACTGGCACCTGCCCCAGCATCCCAAAGATAGG 1258 28 100.0 32 ............................ TGGCGCACAGAGGGCGAGGCGCACGGCTACCG 1198 28 100.0 32 ............................ TGCGCGAAACCAGACCAGCGCACGCGGGACGG 1138 28 100.0 32 ............................ GTCCCGGCGGGGTTAGCCGGGATGGTCGCAGC 1078 28 100.0 32 ............................ AGGGCGATTTCAAACACGCGCTTATTCATCAG 1018 28 100.0 32 ............................ ATGACGCTGGCAACCGCCTTGCCGTTGATCAT 958 28 100.0 32 ............................ GAACAGGCAGCAGAGCCCGCCCCGCGCGGGCT 898 28 100.0 32 ............................ GGGGCAGGTTCCAGTAGGCAAGCAGTACGATT 838 28 100.0 32 ............................ GACGAGCGAAACCGCCGATTTTACGGCGTACA 778 28 96.4 32 .....A...................... CGCCAGACGTGGGGCGAGCAGGTAAGCGCAAT 718 28 100.0 32 ............................ TTGTCAGTCTGATGAAAATAAAGGGCCAATGC 658 28 100.0 32 ............................ AGCATCGAATCCAGCGGCGTGTTAGACGTGGC 598 28 100.0 32 ............................ TAAGAAGGAGTATTTCCCGCTATACAGCGAAG 538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGAGCCTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGAAGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTTGAAGATACAGAAACGAAGTGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCTTCTTACAGGACTGCTCCATGACATCACGCATTCTATGGTTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGACGTCCGAAGTAGGCCCCTGACGCCACCGGCTAGACCCTTTTTTTTTATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCAGGAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : GGTGAATATGTCCCGCCACTGGCCGTGGAAGTGTTCACTGCCGTACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACAGGCAGCTTAGAAACGCGAGGCCGCCGCAGCTCTTGGGATTAACCCGTTCACTGCCGTACAGGCAGCTTAGAAAAGCTGTTCGCCGGTCATTGGTTTATTGGCTGTGTTCACTGCCGTACAGGCAGCTTAGAAAGGTTGCAGCATAGTGCTTAAGTGCATCAGTTTTGTTCACTGCCGTACAGGCAGCTTAGAAATCATGGGGGTGGCCTGACAATGCTGAATTTTTGTTCACTGCCGTACAGGCAGCTTAGAAATTGTGAAGCACTATGGCGGTAACTACCAAGGAGTTCACTGCCGTACAGGCAGTTTAGAAAAAATCGAAGCGAGTGGGAAAAGAACAGTCACAAGTTCACTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9401-11291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLE010000001.1 Enterobacter cloacae complex sp. P3B 1701034349_S78_R1_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9401 28 100.0 33 ............................ GCAGCCGGTCACGGTGACCATCCCGACGCAGAG 9462 28 100.0 31 ............................ GTCCGGGCATTATTTACGATATGCGTGACCA 9521 28 100.0 32 ............................ CATCCTGGTCGCCATCGTCGGGGACAACATCG 9581 28 100.0 32 ............................ AACGCCGTTGCAGGATAACGGCTCAACGGTTC 9641 28 100.0 32 ............................ AAATTTCGTTAAGCTCCGGGTAGTTGAGCATT 9701 28 100.0 32 ............................ GATGCGATTTGCTGCGCTGAGGTATCGCAGAA 9761 28 100.0 32 ............................ GATATCCAAACAGCCCAGGTCTGAATAAACTG 9821 28 100.0 32 ............................ TAGAGCAGCGTTATTTCACGCTCTCGTTTTCG 9881 28 100.0 32 ............................ ATTGGCTTATTGAATCCGTATGTCTTGCGCAT 9941 28 100.0 32 ............................ TAATTCTTTCGTTCATCCCGACTACGGGATAA 10001 28 100.0 32 ............................ AAGACAGCTTAACATTAGCTAAGACGGCTAAT 10061 28 100.0 32 ............................ TTTTGCGGCGCAGATATGCGTGTGATGAATAC 10121 28 100.0 32 ............................ TTACCAGGACAAAATGCACAAAAACATACTAC 10181 28 100.0 32 ............................ AATGCACCACTCGTACGACCACGACGAAGGGT 10241 28 100.0 32 ............................ TATACAGTTACAGACGCGATAAGAGACGAGCA 10301 28 100.0 32 ............................ TGTATAACTTGCCCCGCGTGCTCGTCGTCAAT 10361 28 100.0 32 ............................ AGCACGCCCTCCAGGTCTCCGATAAGCACATT 10421 28 100.0 32 ............................ GCGTTCGTTATCTGCGCATATTCTGCGGTTGG 10481 28 100.0 32 ............................ ACAACCAAAAACAAGGCGGCAGGATGAACCAA 10541 28 100.0 32 ............................ AGGGAGGAAAGGAGGAGGGGATGGAAACCGAA 10601 28 100.0 32 ............................ GTCGCGCTCAACCATTTTCCGGCGCTGTGCTG 10661 28 100.0 32 ............................ GTACATCTATGATGCGGTATTTGCTCCCCTGC 10721 28 100.0 32 ............................ TGGCGAACCTTGCATCAGAGAAGTCTTTTTAT 10781 28 100.0 32 ............................ GCGTTCGTATGCGCTGGTCGCCTGATAATCAT 10841 28 100.0 33 ............................ TGAACGTGACGCGCACGCGTGGGGGGGACATCT 10902 28 100.0 32 ............................ AGGTTCCGTTGACGTAGTTGTACGTAAGTGCT 10962 28 100.0 32 ............................ GCATAACTTTCGTCGTACGCATCTCGGGAACG 11022 28 100.0 33 ............................ GAAAAAAACAACCCAACCATTAACAACATTGAG 11083 28 96.4 33 .....T...................... GACGATCTGGAAGAAGCGGCAGCCCTCGCTAAT 11144 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 11204 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [11229] 11264 28 71.4 0 ......C.T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGTAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGTATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATTGGTTTTTTTTTGTGCAGGGTGGTTTGTGAGAAGAACAATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTGATTTTAAATGAGTATTTTGGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //