Array 1 260-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBW010000155.1 Escherichia fergusonii strain EF20JDJ4033 4-33_FDSW210028502-1r_1_(paired)_contig_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 259 24 75.9 33 -----...................CC... GCTGGTCGAGTGCGTCGTTAGTGATTTCGTTCA 202 29 100.0 32 ............................. CGTATTAAAGGTTTTGATCCCGATCGGTATGC 141 29 100.0 32 ............................. ATCTGATTTCATTCGATCTTCTCTGTTTATCA 80 29 100.0 32 ............................. GTTTGTGATTTCTACTAGCTTTTTAACTCGAT 19 19 65.5 0 ...................---------- | ========== ====== ====== ====== ============================= ================================= ================== 5 29 88.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3437-3584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBW010000107.1 Escherichia fergusonii strain EF20JDJ4033 4-33_FDSW210028502-1r_1_(paired)_contig_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3437 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 3497 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 3557 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGAGGTGGTCCAGACCTTTTTTTGATGATGATAGTAAGTTGTTGATAATTAATACTGCGGGAAGGTAAGGATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAATATCCTCCGGCATAGCCGGAGGTTTTTCAAATGCGCCTGTAAGGCTCTGTTACCAGCCGCGCCCTAACAGGCGCATAC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59264-62097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBW010000003.1 Escherichia fergusonii strain EF20JDJ4033 4-33_FDSW210028502-1r_1_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59264 29 100.0 32 ............................. GAACCGGCGGAACTTCAATATTAAAACCTATT 59325 29 100.0 32 ............................. TTGAGTGATAACAGACGCTGCCTCAGCAGCAC 59386 29 100.0 32 ............................. CCCGCTCATATTCATTGTTAAATTAACTGAAC 59447 29 100.0 32 ............................. TTTGCGTCATAGACAGTCTGATAATCACGCAG 59508 29 100.0 32 ............................. TTGAGTCTGTGACGGGATGTTTTCTGGCATCT 59569 29 100.0 32 ............................. CGATTTATAAAAAATAGTATCAGATCTATTTG 59630 29 96.6 32 ............................A GCAGCCATTACCGTTCCATCTCTTATCTGTCA 59691 29 100.0 32 ............................. AAATTTACGATCCACGACTTGGCGTTACGCAA 59752 29 100.0 32 ............................. GGGCAGATTATGCTCACCGGATTGGGCGAGCA 59813 29 100.0 32 ............................. TGATGGCGAAATTACCCGCGCTGTAGAGCAAA 59874 29 100.0 32 ............................. GCTTGTGTGGGGGAGTGTTCGCTCGTTAAATC 59935 29 100.0 32 ............................. CGCAGCTCGTATTTACCGTGCCAGTTGCGAAC 59996 29 100.0 32 ............................. GCTGGCAGTGGGGCGGTCTTAAATGCCCCTAC 60057 29 100.0 32 ............................. GGAAACTTCAATCATAAAGGTAATTTTGTTAT 60118 29 100.0 32 ............................. ACGTAGAAACAAAGGTTTGATCAACTTCTGCG 60179 29 100.0 32 ............................. ACTCAGGTATTATGTCATCAGGCTCCGAACCC 60240 29 100.0 32 ............................. TTACTGCTGATAAACGCGTTATTGAGGCGACA 60301 29 100.0 32 ............................. GCAATACTCTCTATTTTACGGTGGTTTATAGA 60362 29 100.0 32 ............................. AGCCGAGTTTAAACAGCAGCAGTTACAGGCGG 60423 29 100.0 32 ............................. CCTATTGCAGCTATTGGGGATACGCCGCCGCT 60484 29 100.0 32 ............................. TGACCGAGTGCAGTTGCTAAAACCAGAGCGGC 60545 29 100.0 32 ............................. AGGTGCATTTAAAACAAAAAATACACCGTGAA 60606 29 100.0 32 ............................. ATCCAGGCCGAGAAAGACGGCGAGTAATGCAA 60667 29 100.0 32 ............................. CACGAAATCAATCAGTGCGGCAGTGGCAGGAA 60728 29 100.0 32 ............................. GGAGTTGATCGGGGAGAATACCGTTACCGGCG 60789 29 100.0 32 ............................. TTTGAATGTCTTTGCCCCCCTGGATGATATTT 60850 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCGCGCGC 60911 29 96.6 32 ..........................T.. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 60972 29 96.6 32 ............................A TAAATCATTCTCTTTTTTCATTACCTGCGACC 61033 29 100.0 32 ............................. GAATGCTCTCTGATGCGATTGATATAGCTGTC 61094 29 100.0 32 ............................. CATGGGGATATTCGGCCTCAATGCGGGATTGT 61155 29 100.0 32 ............................. TGCCGCTTTTATACGTCCGATTTTCCCGGCGT 61216 29 100.0 32 ............................. CGTTATTGCGCCTGGCTGCGCATGGGAAGCGT 61277 29 100.0 32 ............................. CGATGAACAGTTTTATTTGTTCAACGGATCGC 61338 29 100.0 32 ............................. CGTGCTGGTGATCGGCAGTTCCAGCGGCTCGC 61399 29 100.0 32 ............................. CAGTAGCGCTGACGGTATATTATGCGAGTATT 61460 29 100.0 32 ............................. CATTAACAACGAATCAGCAATGAAGTACATCC 61521 29 100.0 32 ............................. ACGAACTGATCCGCATAATAGGCTTTATCAGC 61582 29 100.0 32 ............................. TTCGCCACGTCAGGCGTGATTTCCTGCACTGA 61643 29 100.0 32 ............................. GTTCAGCATCAAGTGATGCCAGTGCAATTTCA 61704 29 100.0 32 ............................. ATGCGGCAGACATTTTTACCTGGGGCAATCCT 61765 29 100.0 32 ............................. TAATGGTACCCATAGACCTGGGAGGGCGAAAT 61826 29 100.0 32 ............................. GAAAAACTTGTGGAGTACGGCGGGCGCGATAG 61887 29 100.0 32 ............................. ATATGACAGCACTGAACACTTCGTCCCAAAAT 61948 29 100.0 32 ............................. GCTCTGTCACCATTTCACTGACTGTCTCCATG 62009 29 100.0 32 ............................. ATCTCTTCGATTAACTCTTTGGTTTGCTGCAA 62070 28 89.7 0 ............T..........-....A | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGCATTCCACTCATTTATATTGTTTATCACCTCTGAAACTCATCCATTTTGCCCATCCTGGATTAACCATTATCATTTTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAATCGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCGGCCCCCAGACTTGCGCAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCACCGCCAGTAATGATCACATGTTTCGCAAAGTGATTCATTTCATGACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCATGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87065-88740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBW010000003.1 Escherichia fergusonii strain EF20JDJ4033 4-33_FDSW210028502-1r_1_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87065 29 100.0 32 ............................. AACTGAAGGGCCGTCGCTACCCAGTTAACACC 87126 29 100.0 32 ............................. CTGGGTTTTAGTTTCGACGTTGTAGCGGATTG 87187 29 100.0 32 ............................. ACATTAGCTCGCCATCAAATATCCATGTGCAG 87248 29 100.0 32 ............................. GGGTTGATGGAGTCGCAATTGATGACGCTCAT 87309 29 96.6 32 ..A.......................... GGTAGCGACTATCAATCGATCCGTATTTTGCG 87370 29 100.0 32 ............................. CAGGGATATAACCTGCTGGATGTAGAACTATA 87431 29 100.0 32 ............................. TCGCGGGTCGTAAATTTCCTTCCCCCACACCT 87492 29 100.0 32 ............................. CGGGTGGAGGTGAAACGTCGCTCCACCCGTTC 87553 29 100.0 32 ............................. CGTGACGCGTACACGTTTTTGAGTCAGTGCCA 87614 29 100.0 32 ............................. CCCTTATCACGTCGCCACACCACCGCCCGGAC 87675 29 100.0 32 ............................. GGCAATGTAACTCTCTTTCAGTTCAGAGGGGT 87736 29 100.0 32 ............................. ACGAGGAAATTATCCAGTCCGTCATGGAGTTG 87797 29 100.0 32 ............................. TTATGCGCAGTTCCGTGGCTGCGGACGTGGTT 87858 29 100.0 32 ............................. GGCGAAATGTGAAGTTTTTCAGTGCCGCTTCC 87919 29 100.0 32 ............................. CATTTTGTCGTATTGCTCCTGGATTTCAGGAA 87980 29 100.0 32 ............................. AACAGGAACAGGCGGCGGCAGACAAAGCCGCT 88041 29 100.0 32 ............................. CAGCCAATCCAGAACTTCGACAGAGAAGACTC 88102 29 100.0 32 ............................. GCTGGTCAGTACATCAATATCGTTAACGTCCA 88163 29 100.0 32 ............................. CGAATTAAAGGTTTTGATCCCCATCGGTATGG 88224 29 100.0 32 ............................. ATCTGTTTTCATTCGATCTTCGCGGGTAATCA 88285 29 100.0 32 ............................. GTGAGGGCCAGCCATTCGCGCTGCACGTCGAT 88346 29 100.0 32 ............................. TGGAGGATGCGGCTATAACGGCAACATCACGA 88407 29 100.0 33 ............................. GGGTTATTGCCGACGGAGGAAAACGCATAGCCG 88469 29 100.0 32 ............................. CGATTAGTCATCGGTGTATTCCTTACGTAAAA 88530 29 100.0 32 ............................. CTTCGCAATAAAACCTGATGTAATAAATGATA 88591 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 88652 29 89.7 32 .T.........AT................ GGCGCACTGGATGCGATGATGGATATCACTTA 88713 28 79.3 0 ..A.........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //