Array 1 48321-46825 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGH01000003.1 Escherichia coli strain VREC0523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48320 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 48259 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 48198 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 48137 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 48076 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 48015 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 47954 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 47893 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 47832 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 47771 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 47710 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 47649 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 47588 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 47527 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 47466 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 47404 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 47342 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 47281 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 47220 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 47159 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 47098 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 47036 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 46975 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 46914 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 46853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75150-74023 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGH01000003.1 Escherichia coli strain VREC0523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75149 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 75088 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 75027 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 74966 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 74905 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 74844 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 74783 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 74722 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 74661 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 74600 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 74539 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 74478 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 74417 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 74356 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 74295 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 74234 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 74173 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 74112 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 74051 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //