Array 1 2406642-2405621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054494.1 Flavobacterium columnare strain F2S17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406641 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406575 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406509 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406443 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406377 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406312 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406247 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406182 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406116 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406050 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2405984 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405918 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405852 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405786 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405721 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405656 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975642-2973248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054494.1 Flavobacterium columnare strain F2S17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975641 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975627,2975638] 2975569 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975503 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975437 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975372 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975263 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975251] 2975192 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975126 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975060 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2974994 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974928 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974862 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974796 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974730 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974664 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974598 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974533 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974467 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974402 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974337 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974271 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974205 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974139 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974073 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974007 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973941 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973875 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973809 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973743 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973677 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973612 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973546 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973480 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973415 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973349 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973283 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //