Array 1 1374109-1376098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071094.1 Fusobacterium nucleatum subsp. polymorphum strain THCT15E1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1374109 36 100.0 38 .................................... TATATATTGTAAGTTATCCCTAAACCATTGATTTTAAA 1374183 36 100.0 40 .................................... AGGCTAGTAATGGAATGGGAACAATAGTAAAATTAAGTGG 1374259 36 100.0 39 .................................... ACATTAAATAATGTAATGTATACATTAAATGCTATCTTA 1374334 36 100.0 37 .................................... AATCTTTCATACTCTAATTGTTTCATTTTAGCCTCCC 1374407 36 100.0 39 .................................... AAGGAACTACTGAAAATGGAACTTCTAATACTCCTTCTA 1374482 36 100.0 37 .................................... TTGGCTTCGGGATCTAACCATCCGCCAATGTAGCCAT 1374555 36 100.0 40 .................................... TTTCTCTCCTCAATTACGCTTGTAATAGATAGTGGAATAC 1374631 36 100.0 38 .................................... CAAAAAATTTTGAAAGTTCTATTAATTATACTGACTTA 1374705 36 100.0 37 .................................... TGTCAAGGTCATTGACTAGATGTTTATATTTCATTTA 1374778 36 100.0 38 .................................... ACTACTAAAAACATTGACTATGTCCTCAAAACATCCAT 1374852 36 100.0 39 .................................... GAGCTTTCCATATAGCATATCCAATCATTGCTACTACTT 1374927 36 100.0 40 .................................... TTGTATTTAGATTATATTTAGTTCTTTTTTGGATTTCAGA 1375003 36 100.0 38 .................................... CAGAAAAATCAAGAACCATGTCAGCAACTGTTACAAAT 1375077 36 100.0 42 .................................... CTGCATATAAGATATATTGTTCTTTCTCTATGTACTCTATCT 1375155 36 100.0 38 .................................... TCCTTGCTAATACACCCTTGTCCAACAAAATTAAAAGC 1375229 36 97.2 39 ....................A............... TTTCCTGCTACTCTTTCATAAAATTCTTTTTTAGTTAAT 1375304 36 100.0 34 .................................... TTAATAAATATACCACTATTAAAAATATTATTAA 1375374 36 100.0 40 .................................... TTAACTTAGTCTTCTAATTGCTCATTTTTGTATGAGTTAT 1375450 36 100.0 41 .................................... CCATTAATTACCCCCATAATTACTTTCTTGATATTTAGTGT 1375527 36 100.0 40 .................................... TTTTTACAAGTTGCAACCTTGACAACTATCTGACCGACAT 1375603 36 100.0 41 .................................... AAATATGCAATTACTTGATTAACCATTTTCTAATCCTCCTA 1375680 36 100.0 38 .................................... GATATTAACGTTTATATTTGTTAAATTTTTATTTTCTA 1375754 36 100.0 41 .................................... TTGTGAATGAGTAAGGATGTCTTTTATCTTACTACGATAAA 1375831 36 94.4 44 ....................A.A............. TTCTGTGTTAGGTAAAGATGTAAGATGATTAGTTTTTCCAGTCA 1375911 36 94.4 43 ......A............T................ ACTCCAATCTCTCCTGCTCTTACCTTAGCCCAAAACTTGTCTA 1375990 36 91.7 37 ......A.............A.A............. TTGAATAGAATTGATCAACCATTTTGGAAGATCTTTA 1376063 36 72.2 0 ....................C.T.....TTCCTTTT | ========== ====== ====== ====== ==================================== ============================================ ================== 27 36 98.1 39 ATAAGAGAGAATATAACTCCGAGAGGAGACGGAAAC # Left flank : CAGATATGTACAAACCAGTTTTAATTAGGTGATAATTATGGATAATTGGGATTTTTTAGATGAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACTGTTATTATAATTTATGATATTATATCTAATAAAAGAAGGACACAATTATCAAAACTTTTGAGTGGTTTTGGATTTAGAATTCAAAAATCAGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATCACTCATTGAAAAAATTGATAGATATGCAAAGCCAGAAGATTTAATAAGAATTTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTGGAAAATGAAAATGAAATATACTACTTTTTTTAGTAATGAAGTAGACGATATATTTAAAATGAGGAGTCCAATATGATTTTTACTAAAAGAGAATGTAAATTTTTAAAATTTAAAAAGTTACACGATAATAGTTTTATAAACTATTGCAAACAAAAGTTTTTTTGAGTATAGG # Right flank : TATTGACAAAAAATCAATATATTTTTATAATATTAGTATAAGAAAATAGAAAGATAGAAAAGTCTAAAAGTACTATAATATTCCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAATTACTATTTTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAAGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAACGGAACTTTACATGGAAAATTTGCCTTTACTAGAGATATGGCTACTGAAGAAGATGCTATCAAAGAAATAGGATGGATGACACTAAATAAGGGTGAATCTATTGGAGTGCATCCTCATAAAAATAATGAGGACACTTATATTATTGTTTCTGGAGAAGGAATCTTTATAGATGGTTCTGGAAAAGAAACAGTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAGAGAATATAACTCCGAGAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2172438-2167436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071094.1 Fusobacterium nucleatum subsp. polymorphum strain THCT15E1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2172437 30 100.0 37 .............................. GGAGAAAGAAAAAGACTACTCAAAAACTATGGATGAA 2172370 30 100.0 36 .............................. GATGGAAGTGATGCTTATATGAATCATCTGAAGAAA 2172304 30 100.0 37 .............................. TTGTATGCTCTTTTTGAATTTAAATTCTTTAATTTAT 2172237 30 100.0 37 .............................. CCTTGTTCATTGGCTACTATTAATATAGAAGCTATTA 2172170 30 100.0 38 .............................. GGTGTCTTTTCACATAGTGCTAAAACCTCAGCTTCTCT 2172102 30 100.0 38 .............................. CGTAAAGTTGGAGATATTGTATGGGTTGGATTTAGTGA 2172034 30 100.0 38 .............................. TTCATAATTAGCTACTTGTTGCTCATTAAAAAAAGCTA 2171966 30 100.0 36 .............................. ATTTAGAAGTATCGTAAAAAAGCCAATGTTTTATGA 2171900 30 100.0 36 .............................. GAAGATATAAAGTTAATAGATGCTATTGAAGTTATC 2171834 30 100.0 38 .............................. TAACAAGAACTAATACTTCATCGCCTTTTTGGAGTGTA 2171766 30 100.0 36 .............................. AACATTGTCAAGAGAGATTCTTTCTTCTTGTTTTCC 2171700 30 100.0 35 .............................. GGAACATATAAATCTATATATGGAGATTTTACAGC 2171635 30 100.0 35 .............................. GGAACATATAAATCTATATATGGAGATTTTACAGC 2171570 30 100.0 36 .............................. TTTCTTAAAAGCCTTATATTTTCTTTTCCCATTTCC 2171504 30 100.0 37 .............................. GAATCTGCACTAGATGCAGCAGCAACTAAGTTTTTTG 2171437 30 100.0 37 .............................. GAAAAATTTAACATAGAACCTTGTGTGTTAAATATTG 2171370 30 100.0 35 .............................. GAATGGCAACAACCAATAAATTATATTTCATACAA 2171305 30 100.0 36 .............................. TACGATTATGAACTTATGAAAGATTTAGAATTGAGA 2171239 30 100.0 36 .............................. AGACATCTCTTTGCCTAGACTTTTCATTATACATAG 2171173 30 100.0 35 .............................. TTTGGTCACTAGTAGTGGTTCCCTTTTGGTCACTA 2171108 30 100.0 37 .............................. ATTTATTCTCACCAAGTATGGAGAAGATATGCCAATC 2171041 30 100.0 34 .............................. TTAATAATTTTTCATATATATTCATCTTTTCCTC 2170977 30 100.0 36 .............................. AATAGCTTCTTATAAATAATATTCAACACCATTTAT 2170911 30 100.0 36 .............................. TTCTTATTGTTATAATCTTCTTGAAATTCTTCAAGT 2170845 30 100.0 36 .............................. GGAGTATACAGAGCAATTTAAGCAAATGGGGCTTGT 2170779 30 100.0 34 .............................. TTAATAATTTTTCATATATATTCATCTTTTCCTC 2170715 30 100.0 37 .............................. TAGCATCTGATACTAAGAAAGATATTTCTTTTTCTAA 2170648 30 100.0 35 .............................. GAGGCTTTAACAAGACTATCAGAAAACTTCAATAA 2170583 30 100.0 35 .............................. TTCTATATTTTCATATCTTGTCCCATTCTCTGCTT 2170518 30 100.0 35 .............................. ATGAGAATAGAACCAAAAATAGATCAAATGTTGGA 2170453 30 100.0 36 .............................. TAGTTTTCACATTTTCTATGAACTCATGTGAAGTTG 2170387 30 100.0 36 .............................. TAGCCCAGAACTTTTGCCATTCTTTGCTGTCTATAA 2170321 30 100.0 37 .............................. TTATCTGACCATTCAATAAACTATTTTTTTCTAAATA 2170254 30 100.0 37 .............................. TAAAAGCAATGGGAACTTATTGGGGGATGAATAATGG 2170187 30 100.0 36 .............................. ACCAAACAAATCAAGAATATTCCAATCTTTTTTACT 2170121 30 100.0 38 .............................. TTTTAAATAATTTAATTACATCTAATTTTAATGCTTTT 2170053 30 100.0 38 .............................. TTAGGAGAAAATCCATACAAGGTATAAAAAAGGATTGG 2169985 30 100.0 35 .............................. CTGTTTCACTAGGGTTATTGACTTCATTTAGATTA 2169920 30 100.0 37 .............................. TCGACTAATTGTACTGGTATATTATTTCTTACTTTTT 2169853 30 100.0 37 .............................. TTAGCAGTTCCTAGGATGATTATTGTTTTTTGGTCTG 2169786 30 100.0 36 .............................. ATTCTTATTGTTTGTATTTCATTTTCAGTTAAATTT 2169720 30 100.0 39 .............................. TTGATACTGTTGAAACTATGAAAGCAGTAAGTTCTTTTT 2169651 30 100.0 36 .............................. TTTTTTAATAATTTAAAAAATTGGCTTAATTATTTA 2169585 30 100.0 35 .............................. AGCTTAAAAGAGCTAGAAAATTTTATGAAGTCTAA 2169520 30 100.0 36 .............................. TTGAAAGAGGAGGAAGTGAAAAAGACCCAGTACAAG 2169454 30 100.0 36 .............................. TGTTCCTCGGTTATTGCTAGGTAATGTCCTATATTG 2169388 30 100.0 37 .............................. TGCTAGAAAGATGGATAGACTAGAAATGTTAGCTAGA 2169321 30 100.0 36 .............................. ATTGAAGATGGTGCTCATATCTTGTGTATCTCTATT 2169255 30 100.0 36 .............................. TTACTATCTACCATATTAGGAAGCCCTTTAATGAAC 2169189 30 100.0 36 .............................. GAGTTTAATATTTTCTTTAAATGCTACATTCAAACT 2169123 30 100.0 36 .............................. TAATTTCAATGAATTTTGTTGTTTCTCCATACTTTT 2169057 30 100.0 37 .............................. AAAAAAGAAATAGTTAGAGAAGCTTCTATCAAAAATA 2168990 30 100.0 35 .............................. ACTAATGATGGTAATTCAAAAGTTAAATATGAAGA 2168925 30 100.0 35 .............................. ACATTTTTTCTTCTAATCTATCAAACGGGTAATTA 2168860 30 100.0 37 .............................. GAAACTTTGTTTGGTTCTAAATTTGAAAAATACTTAA 2168793 30 96.7 35 ........G..................... TGAATATATGGGAATAGTAGACAAGCAAGGTTATA 2168728 30 100.0 39 .............................. TATCTTTTTCTGTAAATCTCAATCTATCTAATTTTTCTG 2168659 30 100.0 37 .............................. GTTATATCGCCATATAGCCAAAATCCTGTATCTTCTA 2168592 30 100.0 35 .............................. TTGTAAGTTTTTAACCATTCTTGTAGAGCATGTGT 2168527 30 100.0 35 .............................. TTTTTATCTATTTTCTTTTCTTTTAATTTGTTCCA 2168462 30 100.0 36 .............................. GAGCAAAGAAACTTATTAATCAAACTAAAATTTGAT 2168396 30 100.0 34 .............................. GTAAATCGGGATTATGAAATAGAAAACAAAATTG 2168332 30 100.0 37 .............................. ACTTTCTTGGATTCAGTTACAACAAATTCTATTTTAA 2168265 30 100.0 37 .............................. CTAAGGAGGAGAAATGGCATACATAGATAAATCAATA 2168198 30 100.0 36 .............................. GCATGTTTTTTGCTCCCATGCTCTCTCTTCCTTTTT 2168132 30 100.0 36 .............................. ATCACTTTTGGGAATAAAATAACTTCTATTCCAAAA 2168066 30 100.0 37 .............................. AAAGGACATGTAATTATTTTTGCTGATGGAGATAAAA 2167999 30 100.0 37 .............................. AGTTCCAATTGTTGTTTTAAAACATGATATTAAAAAG 2167932 30 100.0 37 .............................. AGTTCTGTTGCAGCTTTTATCTTTGCATAATCACTTA 2167865 30 100.0 36 .............................. TCCATATACCTTAGATATAAAAGAATATATTTTACC 2167799 30 100.0 36 .............................. GGAACTGCTGCTTTAGGTGTTAAACTTCCTTCATAA 2167733 30 100.0 37 .............................. AGGGTTAGAACTATTTATTTTCCATCTAAACACTGAA 2167666 30 100.0 37 .............................. GGAAAAGTTGCACAAAGAATGGGAGAAAATGCTAGTA 2167599 30 100.0 37 .............................. GAAATAAGACAATTTATTTGGAATGGACTTGTGTCTT 2167532 30 96.7 38 .............................G TGAATTTCTTTAAAATTTAATGTATAATTCAAGTATCA 2167464 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ======================================= ================== 76 30 99.8 36 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : TCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAAGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTGATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTATTAAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCAAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAATTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //