Array 1 1711147-1712738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056165.1 Escherichia marmotae strain RHBSTW-00777 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1711147 28 100.0 33 ............................ GTAATGATGTAAAACATCAGGTTGATAATATGG 1711208 28 100.0 32 ............................ TCCCGGACACCACGCATCCAGTCACGGATGGT 1711268 28 100.0 32 ............................ GTTGTGTGTTCGCGAAGATGTGCAGGGGGCTA 1711328 28 100.0 32 ............................ AACCGAAACGGCAGTAGTTAAAACGTGCGAAC 1711388 28 100.0 32 ............................ TTATGGAATACCGATTCATAACGGCGGAAATG 1711448 28 100.0 33 ............................ GGTAAGCGCCTGGCCGTGACTATCCCGAAAAAT 1711509 28 100.0 33 ............................ AATGAAAGGCGGGCCATAAGTGCCGCTCATCAG 1711570 28 100.0 32 ............................ AGTTTGATTCGAAACTGGCGCAGATAGTTCAG 1711630 28 100.0 32 ............................ TTTATGCGCCCGATTTTCCCGGCGTCACTGCC 1711690 28 100.0 32 ............................ AGTGACGGACAGAACGGTCAGGACCTGGATTG 1711750 28 100.0 32 ............................ TGACAAAAATCCGTTAGGCGCGGAAATGATGA 1711810 28 100.0 32 ............................ TGTTCGCGCGACAATTTGGATACTGAATCAGC 1711870 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 1711930 28 100.0 32 ............................ CGGGGCTTTTTATTCAATATGCCACCGCCGGT 1711990 28 100.0 32 ............................ TCAATCCTCCCCGCCTGCGCCGCGTTGTAGTT 1712050 28 100.0 32 ............................ AACCCCAATAAGCCGACGTGGGGATTTACCGC 1712110 28 100.0 32 ............................ GTCTGCCGCCGGGTTCATCTCGCTTGTGATGC 1712170 28 100.0 32 ............................ GCGCAGTCATGCACAGCGCGCAGCAGGCTGCG 1712230 28 100.0 32 ............................ AATAAGAACGGTCCCTGATGTGCGGAGCACCG 1712290 28 100.0 32 ............................ GTCGGATATGCTGATTATTCAGATGACCGAAG 1712350 28 100.0 32 ............................ GCCTGCGCGCGCACATCGGCGAGCCTGACACC 1712410 28 100.0 32 ............................ ACGCCGGATAAGTCAGCGCGCCAGGGCGCTGC 1712470 28 100.0 32 ............................ GTTTATCGGTATTGAACGGGAGCCGCGATATT 1712530 28 100.0 32 ............................ AATGATTTTCTTATGAAGAATCTGGACAAAGT 1712590 28 100.0 32 ............................ TCTAATCGCCTCGTATCGCCTGGACTGGTTCC 1712650 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 1712710 28 92.9 0 ....................T...C... | C [1712733] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1726990-1727437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056165.1 Escherichia marmotae strain RHBSTW-00777 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1726990 28 100.0 32 ............................ GTTCGCCGCGTTAATGCGGTCCAAAATAAAAT 1727050 28 100.0 32 ............................ GCGCACGGCATCACAGAACTGCATTTTCTGGC 1727110 28 100.0 32 ............................ AGATCGACACCAAAACGCCCGTCTTTTTTACG 1727170 28 100.0 32 ............................ ACACGGAGAGCCAGTGGATTGAAACCACGTAT 1727230 28 100.0 32 ............................ TCCAGCGCCAACGTGATCGCCTGTTTGCGAAA 1727290 28 100.0 32 ............................ ATTTCAGGCCAGTACGACCAGTACCGCACACC 1727350 28 100.0 32 ............................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 1727410 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //