Array 1 1135444-1135673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGWZ010000001.1 Saccharopolyspora lacisalsi strain DSM 45975 Ga0197584_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1135444 30 100.0 37 .............................. TTGGGGTCCACGACGGTCTCCTTTCCGTGGTCCCTAC 1135511 30 100.0 36 .............................. ACCCACGCGTGTCCGTTCAGTGCGTCTTTGAGGATC 1135577 30 96.7 37 ........C..................... TCCAGCAGCCACTCGCGCATGTCCTGGATCACGTCTT 1135644 30 80.0 0 .....T..C...............GA..GT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 94.2 37 GTCCTCATTGCCCCTACGAGGGATCGCAAC # Left flank : GATCGAACCCCGAACCCGTGGATTACCGGCCCACGTTTGTCGATGTCTCGCGTTGATCGGGGACGCCCGTCACTGCCTGGCCGGACTCCGAAAGCGACTGACCACTGAGGATGGTCGTCATGCGTCGCTTGTCGTTGTTTTGTGTGGGAAAAGTATGGTGCTGATCTTGCTGGACGCACTCCCCGCATCATCCCGACACGGTGCTGCTTCTGCGGTCGGTGGTGCCTCGTCAAGGTACTCTTTCCCGCCTTGACGTCGTGGCGCCGACCGTGGTTCGCGTCGTGGTGTCGGGGTGATGCTTGGTTATGTCTGCGGGCGTGCTTGTGCGGTACTGTGCGTGTGGTGATCGTGATGTCGCTGCTACAGGAGGCCACATGGCGTGATCGGCTCGGGTCGGTTTCAGCACGCCGCAGCGTGTGCGTGTCCGACTTCCGGCGCGCTGCTGCGGACGGGCTTCTCAGGCGGGTTGAGTGCGCTGTGACCTGCGATTTTACTCTCGG # Right flank : TGGTTTCAGAGGTCCGAGTGCACTTGAGGTGACCAGCGGAGTTCCGGGGCAAGGCTGTGGTCAGCGCGGATCGCCCCGCGATCCCCGATGTCCACGGCCGCGGCAGCGATCGCCAGGATCAGCGGTTTCCTACTGGCCTGTGAGGGCCAGGGGCTGTTGATCGTGAGAAAGGATCACGAAAGTGGTGCTGATGATCTAGGGTGTGCGATGGCCGTGTGTCGTGGAGGGGAGCGGTGTGGCCGACATCGTCAGTGGCCAGGGCTTTCGGGTCGATGTGGACGCCCTGATGGATGCGGGGATGGGGGTCTCCGATGTCATCGACGGGGTGGCCAAGGAGAAGATCGAGCGCGCTGATGGCCCGCCGGAGGCCTATGGGCATGATGGTCTGGCCGCAGAGTTGGCCGAGTTCTGCGAGCAGGGCCAGCAGGCGGCGCAGTACCTGACCGAGGACGGCATGTTGCTGGCGCGGGTGCTGCTGGACAGTGCCGGTGAGTACGTCT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATTGCCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1174551-1174325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGWZ010000001.1 Saccharopolyspora lacisalsi strain DSM 45975 Ga0197584_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1174550 30 100.0 37 .............................. AGCTTGAGGCACCGCGCGGCGAGGTTGCCCCATGCTT 1174483 30 100.0 36 .............................. TAGGCCAGCCGCAGGACGGCGTTGGCGACGGCCCCG 1174417 30 100.0 34 .............................. AGTTGGAATACGCCGAGTGCGTGCCCGGTCGACA 1174353 29 90.0 0 ........................-..C.G | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTCCTCATCGCCCCTACGAGGGATCGCAAC # Left flank : GGCAACCCCGCCACCGGCAACGCCCGCACCGCCTCACGCACACGTTCCTCAGACCCCCTGGCCGGAACGACAGCCTCCATAACCTGGTCAGCAACCCTCTGAAAGCCCTCGCTGCTCATGACATCCACTCCTTCAGACGCGTTCCACACACCCCTGAAGTCCGCAAAACCAACCCCGACCGGCCAACCCCGTCCCGGTCTATCGGGCAACAACACCTCATCAATCAGAGCCAGGTCGAGCATCCGCCAGAACGGGAAGGGGCTAAACCGTGGTTCGCATCCGTGGTGTCGGGGTGATGCTTGGTTATGTCTGCGGGCGTGCTTGTGCGGTACTGTGCGTGTAGTGATCGTGACGTCGCTGTTACAGGAGGCCACATGGCGTGATCGGCTCGGGCTGGTTTCAGCACGCCGAGGCGTGTGCGCGTCAGACTTCCGGCGCGCTGCTGTGGACGGGCTTCTCAGGCGGATTGAGTGCGCTGTGACCTGCGATTTTACTCTCGG # Right flank : TGGTTTCAGAGGTCCGAGTGCACTTGAGGTGACCAGCGGAGTTCCGGGGCAAGGCTGTGGTCAGCGCGGATCGCCCCGCGATCCCCGATGTCCACGGCCGCGGCAGCGATCGCCAGGATCAGCGGCTCCCCGGTGACCCTGGGGGCGATCGACCCGAGGCACCCAACGTCCACAGCTCTTCTCGGCGGCCCCTCCGTGGCTTCCGGCCGCCTGCCTTCCGCGTGGCGTCCGGTGAAGCTGATCACCCTCCGCTGGCGCTCGGCCGCCGGCGCCGGGACCGGCGCCAGCCGCACGCCCGGCGCCGGCTTGGCCGAGCTCGCAGACAGCGGGCGTGCAGCTCTCGCCGGACGCAGCGAACTCGCAGGCAGGCGACCCCGGAGGGGCCGCCCTTGATGAAGAAAAGAAACTCTGAACACACGCACTCCGGGTCTCGGCGTCGGACTGCCGCGCTGGCTTAACTCAGCTACGACGTTGCCGTGGAGGACGTGGACGGGCCGGTC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 268309-269133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGWZ010000003.1 Saccharopolyspora lacisalsi strain DSM 45975 Ga0197584_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 268309 30 96.7 34 ..........C................... TGTCCTGCTGGTTCATGATGTGGCCCTTCCTTGG 268373 30 100.0 35 .............................. ACCTTTTCGACGTCCTCCGCAGGAATGGGGTTATG 268438 30 100.0 39 .............................. CTGTGACGGCTGTAGCCGACACCAACCACCACATCCCCG 268507 30 100.0 37 .............................. ACTTCCTGTTCTGCCTTGATCATTCGTCCGCCTGCCG 268574 30 100.0 35 .............................. GGGAACCGGCCGGATACGCGGGCGGTCACGGCGCG 268639 30 100.0 35 .............................. AACGGGTCGGTGGAGCTTCCCGAGATCATCAACTT 268704 30 100.0 36 .............................. TGGAACGACCCCTTGCCGGTAGCGCGGGCGAACCGC 268770 30 93.3 39 ........T.C................... TCGTCGAGGGTGATCGTGGCCTTGTTCGTGTCGGGTTCG 268839 30 90.0 37 .C...T.....T.................. GCGATGTAGGCCATCTCCAGGCACGTCGCATCGAGGT 268906 30 96.7 36 ......G....................... TCGAGGTCTGCTTGTCCACTGCGTCGGTCCCACCGG 268972 30 90.0 36 ........T.C.....T............. TCCATCGCCCCGTACAGGTTCAGCAGCGCTTCGAGG 269038 30 96.7 36 ................T............. GCAAACGCCGCAGCCAATGCGGCCTGCGGCGAGGGT 269104 30 96.7 0 ..........C................... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 96.9 36 GTCCGCACCGTCCCTACGAGGGATCGCAAC # Left flank : GTGAGCGCGCCGTGCTCGCCTGCGGGACGAGCACTGTTTTCCCTGGTGGGAAGTGGTGCCCCCGGTAGGACTCGAACCTACGACCTAGAGATTAGAAGGCGCCCGAGCAGCATCGACACCGACAACGACCAGCGACGATGGTCACATCGTCGGCCCCGTCATCCCGCTGTGGCCACCCGTGTCGACTCCATTTCGGGTCACGGAGTGGGTCACGACGGCGAAGTCCTGACGCGGCTCGGTCCGGCTTGATCTCGCTCAGTCTCGGACCAAGGGGAGTGGTTTTCCAAGGTGACTTCGCCGGGCCGGCGGTACCGATCGATCTGATGCCGAGGCGGATGGGAACAGCGGTCCTGGGGTGTGGTTGACGGCTACTCTCGTGGCATCCTGGATGCCCGATCTTCAGTGAGCCAGCCCGACGAAACGTCAGACTTCCGGCTTGCTGGACACGACCCGCTGTTTAACAAGATCACACCGGATATGCCCAGCGGTTTTACTCTCGG # Right flank : CTAGTCACACAGGTTGTAGCTGCCGATGCGCAGGCGTTGGTTCGTCGTAGTCGCCCTCGTAGTCGCCCTTGCGCAGGGTGATCGCGCTATGCCTGATGTGTGGATGCGTGGCCGAGGAAGGCAGCGGTGGTGCGACGCAGCGGCGTGATCTGGATCATGGAGTGCTCGCCCAGCACGTTGTCGCTGCCGCGGTACTGCTTGACCTGGCCTTCGTCGGGCATCCAGTGCCGCAGCGGGGTGATGCTGGGTTCAGCGATCGACTCGGACGTAGTCCAGAGGTCGTCTTCCTGCTCGTTGTTGTTGGCGAGCAGAGCGGCCCACCAGTGGGCGCCGTCGATGCGCACTCGGAGCCACCGGCCGGTGCTCCAGGCCCAGACATGGGTCGTGACCGGTGGTGTCGCGGGCATGGTCTCAAGGTGGAAGCCCTCGACGTCGGCCCAGGCTGCCGTCCAGGATTCGGTGACAGCGTGGAGCTGGTTCCACGTGTCGGCATCGCGGCG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCACCGTCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 277360-277653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGWZ010000003.1 Saccharopolyspora lacisalsi strain DSM 45975 Ga0197584_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 277360 30 100.0 35 .............................. CCGGTTTCCGCGACATGACGGCGCCCCCCGGCCAA 277425 30 100.0 35 .............................. ATGCCGTGATCCTGCTTGTAGAGGTACACAGCCAT 277490 30 100.0 37 .............................. GGAACGAGGACCGGGCCTACGAGCTGGTTCTGGTCGT 277557 30 100.0 35 .............................. CCTTCAGGTAGGCGCACCAGTAGGACACGAGCCCG 277622 30 86.7 0 TG......................G....G | C,G [277627,277648] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GCTCGCACCGTCCCTACGAGGGATCGCAAC # Left flank : AGAAGTTCTCCACCGGCGCCTTCGAGCAGTTCGGTGTCGAGACCGTGCACGTCCTCACCGCCGGCGGGAGCATCCCGAGCCGGGATAACCCACCTAATCACGACGGTGCGCGCTTGAAGCAGCTCGCCCGGGAAATCGCAGGGCAGCTCGTCCGCGTTAAGAGAGACAGCGGAAACAGGGAGCTCGTCGTGGTCGCCATGATCCCCAAGACCGTGGCTCTGACCGTCGGCTGGCACCTCTCCCAGTACGAGTGCCGCTTCTTCCAGGGTACCCACCTCATACACTACGACTACGCCAGAGACGTTTACATCCCAATGCGCGTGCGCCCCTCTCAGCCGAGCACCCCACCTCGACGAAGCGGGGCTCTGCACGATTCGCAGCCCGCGGAGTAAGATCCGGTCAGCAGGCCCCGGCGTCGACATGCCAGACTGGCGGCCTGCTGCCGCAGGGCGGCATGTTGATCTCATAACAAGCACTGTGACCTGCGATTTTACTCTCGG # Right flank : GCCAGCTGGGTGAATCGGGCCCGTCGCTGGCGCGGCGTGTGGTAGACCTCGGGGTGATCACGAGGAGGTCTGCGTGCGGCTGCGGGTGGAGCTGACGACGAGAGCGACGGAGATCCCGAAGCGGGACGTGCTGCGACCGGGTCGGGGGGTCATGTACGGCCTGCTGGCCGAGAACGCTCCGTCGTGGGGAGACCGGCTGCACACCTCCGGTCTGGGCCCGCACGGGCTGGTGCCGATCGGGCACAGCGCCCCGCGGTTTCCCGAGGCGCGCGCTCGCTCTGGCGTGCATGCGGCTGGCGGGCCGGGCGTGGTGGAGTTTTCCAGCCCCCTGACCGAGATCGCTCACGCGCTGAACGCCGGACTGCAGGAGAGGTCCGTGCTCGACTGGGGCGGCGTGGCTCTACAGGTGCAGCGAGTGACCCCCGTGTTCCCGCCGCTATTCTCCCACGGAACAGCGGAACTGAGCACGGTCACCCCGGTCGTGGTCAAAGGTCCACCAG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCGCACCGTCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 278660-279287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGWZ010000003.1 Saccharopolyspora lacisalsi strain DSM 45975 Ga0197584_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 278660 30 100.0 36 .............................. TTGGGCTGTTTGCCCCACCAGGGGTCTTGCAGTGTG 278726 30 96.7 36 ...........................G.. TTGGGCTGTTTGCCCCACCAGGGGTCTTGCAGTGTG 278792 30 100.0 35 .............................. CCCGGGACGACTTGTTCCAGCTTCACTGTGGTCGT 278857 30 100.0 37 .............................. GCGAAGGTCATGGTGCCGTTGCGGTAGTGGGGGAAGG 278924 30 100.0 35 .............................. GTGACGACCCGCTGCGCTTCGAGGCGCTGGAGGGC 278989 30 96.7 35 ........T..................... AGGGCGCGGGCTGCAGCGACGAGTGCCTGTGCGCG 279054 30 90.0 38 T.....T.T..................... GCAATCGCGGCTTTGACGGTGGTGGTGGAGACGCTGAA 279122 30 86.7 39 ...CGCA....................... TCCCACCATTGCTGCGCGACGGGCTCCGCCCGCAGCAGC 279191 30 76.7 37 ...CGCA.T.C.............A..... CCGTGTACCAGGAGCCCGGTGTCGTCGGACCAGGCAT 279258 30 70.0 0 ...C.CA.T.C.....T.....G.AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 91.7 37 GTCGCACCCGTCCCTACGAGGGATCGCAAC # Left flank : CGAACACGGCCAACGACTACGCAAACAACGCTGGTTGCTTCCCGGAGAATCGGACTGGGAAACCTACTTCGTGAACAACCTGCGCCGCAAGGCCGAAACCCTCGACCTCGACCCCGACGTGAAACTCGAGATGCTGACGCGTGTGGGCCGCAAACACTCGCTCGCGGTCGGCCGAGGCACTAAAATCGGTGCCGAGGTAGCCTTGCGGTTGTCCGGCCCACCAGCGACCCTCCAGGCACTGTGGTCGTGGGGGCTCGGTGCATCGAATTCCGCCGGCTTCGGGGCGGTCACCGTATAGCCCAACTGTCCCCTGTGCTGTGCTCCCTGCTGAGGCCGTGTCGGACGGCAGTCGCGGCATGTTGTCAGTGATTGACCTCGTGGAGTCCTGTAGCGTGCTTTTCAGCGAGTCGGGCCGAGGCTGTGCTTGACTTCCGGCTTGCTGGACACGGTCCGCTGTTTAACAAGATCATACCGACTATGACCAGTGGTTTTACTCTCGG # Right flank : CTGCTTCGACCACCTGCGAGTCGCGTTGTCTGCACGGCCCTGCGAGGGATAGCAATGGGATGCTGGTGAAGACGAGTCGAGACCGCCGTGTTCGCGCCGTCTGCGCAACGTTGACACGGTGCGTGCGGCTAGCTACGGACCGCTGATCCGCATTGTCTCTGTAAAAACCGCAACTTCCCGAGTCATTACAGCTAGTCTTCACGTTATGAACGAAGAAACACGCACAGCGCTCCGGAACTACGACTGGATGGTCCGCAACCGAGGACTCGGTGATGTGGAGTTGGCCTGGGACTCCGACACCATCGTGTATGGCAACGGTGGCGCTGTCATCGATACCTTGTGCGAACCAGGTTTCACGCCCGCTACTTCCGAGCCGGAATGACCTACCGGAGGCAGGACTCGTAACAGCAAGAGGAGCAACTGAAGTACCGCGATGAGTGGGCTCGTGGGAGAGCTCTCCCGCAGGCCCATTCGTTCAGCGTCCCCTGCAAGGTCTCCAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCGTCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //