Array 1 80164-78633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019286.1 Halobiforma lacisalsi AJ5 plasmid pHLAJ5I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 80163 30 100.0 34 .............................. TCGCCATTAGGCGGTCACCTCCTCGTCGTCGGGA 80099 30 100.0 34 .............................. TCGTTGTGCGTCGGATGGATGACGGCGACGGCCT 80035 30 100.0 34 .............................. GACGCCGATCCTTGTCTCGTGCTCATGTGCCTGT 79971 30 100.0 37 .............................. CTCGAAGACGGCGCGCACGTCCTGATTTCGGGGGCGG 79904 30 100.0 36 .............................. CCCTCTTCGACGATGCGTGCGCTCAGTTGGCCGTGC 79838 30 100.0 36 .............................. GCACGCCGGTCGTAGTGCGCGTTCGACTCCATGAAC 79772 30 100.0 36 .............................. TCGGAAGTAGCGTACTGGATGCGCCAGATTGTCGTT 79706 30 100.0 34 .............................. GTTCTCTCCCACTGCGCGGTCGACACCAGGGGCG 79642 30 100.0 35 .............................. ACGTCTCCGCCGGGGTAAGTCGGATTGAACGTTTT 79577 30 100.0 36 .............................. ATCGACGACGATGAACACTCGCAGATAGATCCGCGT 79511 30 100.0 36 .............................. GAGCCCGCGCACGGCCTCGCCACCCTCGACGCCTGC 79445 30 100.0 34 .............................. GCGCAAGTCCCCCGGCACCCGTCGGGGCGTGCTC 79381 30 100.0 35 .............................. GTCGACGACGGCGACGGGCCGGGAGAGTCGGAGCA 79316 30 100.0 37 .............................. AGTTCGACGCCGATGTACTGGGCGACCAACAGCGCGC 79249 30 100.0 34 .............................. TCGAGTACGCCGTACACGGCGGATGGAGAACGGC 79185 30 100.0 37 .............................. GACCTTTACCTCTACGACTCCGGAGCCCCCGAGCAGG 79118 30 100.0 33 .............................. GAGCCGCGAAGCGACGGCGGCTGGATCCTGATC 79055 30 100.0 37 .............................. CCTGACGAGGCCCCGCTCGAGGAACTCCCCGAGACCT 78988 30 96.7 35 .............................T ACCTCGATCGACGTCCACTCCAGCGGAACCTCCGC 78923 30 100.0 34 .............................. TCGGCCCCCTGGAACCTCGTTTTCGTGAGTAATT 78859 30 100.0 38 .............................. CAAGAAGGGCGACGTTCCGATTAGCCAAGACGACCAGA 78791 30 100.0 33 .............................. TCGGCGTCGCGGTACTCGAGTTGCAGTTGCTCG 78728 30 100.0 36 .............................. GAAGACCCGATTCGGGACCTTCAGGGCGTGAACGCG 78662 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.7 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTTTGAATAGAAAGGTAAGTTTCAAAACGCTGGTCCAGACTGATGTTTACAGTCTGAAAAAGCATGTATTAACGGATGAACCTTACCACGCAACTGAACGGTGGTGGTGAAATGCACGTAATAGTTGTCTATGATGTCTCTAGCGACCGAACTCATATCTTTCGAAAATTATTGCGGCGAAGGTTGGAGCATGTTCAGCAGTCGGTATTCTTTGGAGAACTTACGGAAGGACAGGTCACATCAATGAAAAATGAAATTGAAGAGAAACTAGTACCGGAAGATTCAGTGGTTGTTTTTGAGTCAACGAGCCCTGCTGCTTTTGATTTTACCACGTTCGGTGCGAGTCAAGAACCAGGCAGTCGGTTCACCTGATGGAAATTAGCTTGTAGTACATGCAAATTCCATCGACCCCCTGGGGGTAGAAGGGGAATTGAGGGTCGATGGAAATGACTTTGTGAAATCGCCCGTATTATTCGCTCGTCCACCAGAATGTCGGTGG # Right flank : CGATCGCCGGATTGAGATCACTATGTCGACCCTCAGTTTAGTCAGGCTTTCTGGAATTGAAGAATAGACCAGAGCCATTTCTCTGTTTTTCTTCTGAAAATATACTTCGACCCATCTCAAGACAGTCCTGCCCACCCCATTCCGACACCTACTTTTTCCAACCACAACCACCCACAACCAAGATGCCTCGAGCGGGCCCACTCAAACAGATCCTCCGGACACTGACGGTCGCCGAACTCCGCTCTCTGCGCCGCACCCACTGCCCACAGGTCACCGAGTACGACGGCAACAAAACCGCCTTCGTCGACCGCCTCCGCAACTCACTGAAACGCTCGATCGATGACGGCGAGCTCACCTACGAGGACCTCGTCGAGTTCCTCCGCGACGAGTTCGAATCCAACGGGCCCGAACGAGCGACGACCTGCATTCGCCACACTTTAGAAGACCTCACGATCTCTCCCTGTGCCGGCTACAGGGACGGCCGCGCCGTCAGGGAACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 93556-89985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019286.1 Halobiforma lacisalsi AJ5 plasmid pHLAJ5I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 93555 30 100.0 34 .............................. TGGTACGAGCGCTTCGAGGCCGACGGCGAGCACG 93491 30 100.0 35 .............................. ACCTAAAAGGGGCAGGGTGGGGTGGGGCAGTCACC 93426 30 100.0 35 .............................. GGCTTCGAGCAGGAGTTCCTCGGTGAGCTCGTCGT 93361 30 100.0 36 .............................. ACGCGCCGCGGAAATCGACCGTGTTACCGTCGTTGG 93295 30 100.0 37 .............................. TCGCTCGAGGAGTTGCGCGACGGCGGTCGGGAGATCC 93228 30 100.0 35 .............................. GATCTCGAGCCGGGAACGCTCGAGTTGGTCGCGGA 93163 30 100.0 34 .............................. TCAAAGAACTCCCCTAACACACTATCATACTATC 93099 30 100.0 36 .............................. ACCGTTACGGCCGTCTCTACGTCCGCAGGTGGAAAC 93033 30 100.0 36 .............................. TACTCTTGCCTTGGTGAGACGGCCCTAACGAACGGG 92967 30 100.0 37 .............................. TGTCAGTGTCGAAGCGATTAAGCCCAGCCCAGTCAGC 92900 30 100.0 35 .............................. TCAATCACCTCGTAACCTCGTGCACAAGCGCGCGG 92835 30 100.0 34 .............................. TCGGTGTACGCCGCCTTTCCGGTGAAACCCTCCA 92771 30 100.0 35 .............................. GAAATAGAAACGTCGGTTAGCGACTACTAATCAGT 92706 30 100.0 36 .............................. TGGATCAGTGCCGGCGATGCAACGAGGCGAAGGTCC 92640 30 100.0 37 .............................. GAGAACCGTGAGGGCGTCTCGTGGCGAGTCTATGAGA 92573 30 100.0 36 .............................. GGACTCCGAGGGACTGACCATCGGGTCGTCGCGATG 92507 30 100.0 34 .............................. TGGGTCTGCCTGCCGCTCTCCCTCCGGAACGCAG 92443 30 100.0 36 .............................. GGCGTCACGGACCTCGCGAGTACACTGCTTTTCCTC 92377 30 100.0 36 .............................. GAACCGTACCAGTGCGAGATGTGGGGCCGCGTGATG 92311 30 100.0 36 .............................. CTGCCGTGCGAGTCGACCGCGAAGTCGAGGGAAGCG 92245 30 100.0 35 .............................. GGCCGTTCGGGTAGGACCCTCGTGTATGAAACGAC 92180 30 100.0 35 .............................. TGCCCCCACTCGTCGGTGAACCGCTGGTAGACGTC 92115 30 100.0 33 .............................. GGGACGTCGGCTTGCTCGAGGCGCTGCTGGAGA 92052 30 100.0 38 .............................. TCTGACCCGCGCGGGATTGGGGGTCCACTCTGACCACC 91984 30 100.0 35 .............................. TTGAGCTCGAGGCCGCCGGTGCCGCCCTCGTCGCG 91919 30 100.0 34 .............................. GGACTTAACGGTAGTCCCACGGACGAACCGGACG 91855 30 100.0 37 .............................. GCACCGAAGGCTGGCGACTGGGGCGTGTACGAGAGTG 91788 30 100.0 37 .............................. ACAGGCGCGGCTAGGGGACGTTTCCGAAGGCACTCGA 91721 30 100.0 36 .............................. AGCCCGCGGTCGACCTTCTCAACGAGGTCGTCGTCG 91655 30 100.0 36 .............................. CACTACTCGGATTGCATCGTCAAATGCGAGTGTGGT 91589 30 100.0 38 .............................. TCGCTGCCGACCTGCGTGACGAGGTGTTCAGTCCCGTC 91521 30 100.0 36 .............................. ACGCAGACGGATAGCTAACCGATCAACCACGCACGA 91455 30 100.0 34 .............................. GAAGGACGACCTCTCGGTCACCGTCGACGAAGGC 91391 30 96.7 32 A............................. AACCTGACGTCGTCGACGTCGGTCGCGAGGTC 91329 30 100.0 36 .............................. GCAACCGAACCGATCGACTCGAGTGATAGTCGTCGG 91263 30 100.0 37 .............................. TGAGCGAAACTGGCTACGAGGATTCGGGGCTCTATCG 91196 30 100.0 36 .............................. AACGTCAGTAAGACGTACGCGAGCGACCGCACGGGT 91130 30 100.0 36 .............................. GCGGGGTGGTCGCCGTGACGCCGTCAGACGTGACTT 91064 30 100.0 36 .............................. ACGTTCGATCAATTCCTTAGAGGGACGAAGGTGAGT 90998 30 100.0 34 .............................. AATTCCCGCTGATGATGTTATAACCAACATCCGA 90934 30 100.0 35 .............................. GCATGAGCGACGAGAACATCGACGATATCGACACG 90869 30 100.0 36 .............................. TTGCCTCGATCGACCTGCTCCACGAGGCCGTGGTCG 90803 30 100.0 36 .............................. AACCTGAGCGAAGACGTTGACGAAGGAACGATCAAG 90737 30 100.0 35 .............................. TCCGGTTTCGAAGGACGGACCATCGAACGGGGCTC 90672 30 100.0 35 .............................. GGCGACGAACCGGAGGACACGCTTGTCGGCATCAT 90607 30 100.0 36 .............................. TCGTGATTCGGGTCCAGGCCGGCTGCCTCGAGTGCG 90541 30 100.0 37 .............................. ATGTTCGTGCACGACGAGTCGGAGTGCAACGCCAAGA 90474 30 100.0 35 .............................. GTCTATGAAGGCTATTCTATAGAGGAAACGTATAG 90409 30 100.0 34 .............................. AGCCTCGAGCGGGCGATCGACAAAGACCTCGTCG 90345 30 100.0 36 .............................. GGCGAGTGGCCACAGGAGGTCTACCGGCTGTACGTC 90279 30 100.0 37 .............................. ATGTTCGTGCACGACGAGTCGGAGTGCAACGCCAAGA 90212 30 100.0 36 .............................. GAGTGGCCGGTCCACATCACCACCTGGTCAGGGACC 90146 30 100.0 35 .............................. GAGTTCTTCCTCGGGGACAAGGTCGAACGGCCGCT 90081 30 100.0 37 .............................. CTCGCGGTCGCCGGTATCAGCGCCACCTCGAGAATAG 90014 30 93.3 0 ............................AT | ========== ====== ====== ====== ============================== ====================================== ================== 55 30 99.8 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACGAGCGACTCCGTCGCGCCCGATTCGGCGCGACGGTGTCGTGTGTCTACTGCGGGGAGAGCAACCCAGTCATCAAGAAGGGGACGACGGGGAAAGGCGCTCAACAGTACCGTTGCAAGGGGTGTGAGACATATTTCAACGACCTCACGAATTCGGTCTTCGAGCATCGGAAGTTCCCCATCGAGGAGATGTTCTACATGATCAAGGAGATGCGATCTGTGCCGACGACACAGATCGCGGCGAGACCCGCCATAGCTTCCTTCGCCAGTGGCTGGCGAAGTTCAGAGGTGTCTCGAAGCATCATCTTCAGGGCTATCTCAACTTTCTCGGCCTCTTGCTGAACGATGACACCGACTGGTTCAGCAAAATCCTGAGTTACGAGTCATCGGGATGAGCGAATTTCCATCGACCCCTCGGGGGTAGAAGGGGAATTGAGGGTCGATGGAAATGACTTTGTGAGACCGCCCGTATTATCCGCTTATCCGCCGGAATGTTGGCGG # Right flank : GCAGTCGCGGCGATGAAATCGATTCCAACCTCGGCCCAATAGTTTCATATGTTAGTAATTTAGTGATATCAACGTGGCATTAAACAGTAGGAATAATCAGGTGGTCTGACGGATGCGTATCGAACTCGCACTGGATGCGGTCGCGGATGCAGCCTACGATACTGCTGCACATCACAAAATCCGGGGCCGCATTTGGCGTGCACTCGAGAACACGGATGAATACGCTGAGGTCCATGACACACACCATGGGGTCGGCTTTTCGTTCTCGAATATCTTTCCGTGGGGCCCAATTGAAGAGGGTGATCGTCGGTATATCCGAATCGCTTCCCCGCGTCGCGACCTCTTGGATGAACTCATTGCCCATTTTAGCCGGAACCGTGAGTTCGAGGTCGGGCAGATGCGTTTTGAAGTGGCGGATATCACCGGCCATGCACCCCAAGTTGGTGAAGCAGGCTCGACTGGCCGTATGGATACTGGGACGGGCGTATTCTGTGCACTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //