Array 1 115748-116215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000020.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 115748 37 94.6 35 ..............GA..................... CACTGGGCATCGGTTGCATCTTGGTTGCCGCCCAA 115820 37 100.0 36 ..................................... TAAAACGATCAACAAGGGCTGATTGCATTTTTCCGA 115893 37 94.6 34 ..............GA..................... GCGGCGCATACAACCGCCTAGCACTGGCTTATCA 115964 37 100.0 35 ..................................... CCTTTCTTGATGTTGACCCACTGAAAGCGAATGAT 116036 37 97.3 35 .................................G... GCACTCAGTGAGCATGTGGCCGCGAAAACGCCGTG 116108 37 94.6 34 ...................A...............T. TGAAATAAATATTAAAATCGGCCCAACCTTGGTA 116179 37 83.8 0 ...............T..............AG..GTG | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 95.0 35 GTTTCAGTATCCTCTCTGCGGATCGATTAATTGAAAT # Left flank : GAATTATTGCCAGATATGCAGCAACTGCGGCGCGAACGGCGCAAAATTCATTTTACCTATCGTTTACCTGCTGCGTTTGCCAGTGGTGGGGTAAGCGAGCGATTTATGATTGAAGCGATTCGTTATGTCGATGATGAAATCGAGATTGATGCCAGCGAATTTAGCGAATTTCAGATTATTCGAATCTTATTGGGCTATGGCGAACATGCCCGCTTGATCAAAGGGCCTGAATCATTATTTGCACAACTGCGCAGCGTGATTGCAGCGATGTATGCGCATTATCACGCAAACGCAGCACAAGAAACGAGCGAATAAGTGGCAAAAAGCGTTGTTTATTGCAGCAAACCAAGCTAATCGCGCCATGTTTTAGCTAATGATTGAATTAATTGCTTATGATCAGCAATCCGCTCACCCCCCCCTTCTGTATGAATCCGCTCAATTGTAATCGATCCAAGTCTGGTAATGTATAGGCTAACAAATGTTTGCTATAGCATCAACAA # Right flank : GTCGATCGGTCGCCACGCGGTTTGAGAAACTGGCCCTGAACTATCTTGGATTCGTCCATCTGGCGATCATTCAACGCTTGGTTCGTATCCTTGCACCAGCGACATCAGGATCCTGAATTATCAGACAGAGCCTAATTGAATTAGTCGCCCGTCTCGTCGTCAATCACCCCATAAGTCCTCTTCGTGGGGTAACCCGATAGCATAGACCGCTGCTCCTTGGATAGCAATCTGGCAGGATAGCATCTAAGACCGCGGAACGCATGTATCAAAAATCACAAAAAGAACCCTACTCTGACACTAAATTAGTGAGAAACTGACATCAGGAAAGGGTATACGTCAGAATGACAGTACGAGGATGAACGTTGCTGCCATGCACTCGTCATGCTCTTTTCGATGGATGGTGATTATACATTGAGAAAGGGTCTCTTCATATCGATGAAGAGACCCTTTCAGTCGTAGAGTGCAGAAGTCTCTCTTTACTGGTTGAGGGGTGCGGCAAG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTATCCTCTCTGCGGATCGATTAATTGAAAT # Alternate repeat : GTTTCAGTATCCTCGATGCGGATCGATTAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 37416-38495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000028.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37416 37 100.0 37 ..................................... CTTAAGTATGCTTTGAGAACTTAAGTTCTGAATCGTT 37490 37 100.0 39 ..................................... ATGACTCCACCATTCACCACATCGAGCGAATATGTTGCA 37566 37 100.0 35 ..................................... TGATAACAGCCATAAACTCATCAGAGTTCTGAGTA 37638 37 100.0 39 ..................................... GCCCACCCGGATTGACCGCCATCCGTTGTACATCTCTAC 37714 37 100.0 39 ..................................... GAACTGTAGATTGAACCGGAACTCATTTACAATATTAGT 37790 37 100.0 35 ..................................... ACGAGTGCGATCAGCAGAGCGAGAGCCAGGAACGC 37862 37 100.0 39 ..................................... ACTAATTGCTTGCCCGAAGACGTTTCGGAAGTTAACCCG 37938 37 100.0 39 ..................................... GCGCAGAAACGCAAGCTAGTTCATACTTATAGCCACCTT 38014 37 100.0 37 ..................................... ATCACCAAGAAACCTATTACGGCACCAGTAATAAAAC 38088 37 100.0 39 ..................................... CAGCATCTTCAATGGCCTTGTTCAATTCTTCTGGGAACG 38164 37 100.0 35 ..................................... AATCTCATCCGGATCGAAAAAATCCGAGCAGTGAA 38236 37 100.0 39 ..................................... TGGATGTGTGTGAGTGCGCATTGTTGCACCAGCTGCTTT 38312 37 100.0 36 ..................................... TTGAAGGTAATTAGCGTCATCAATCACTGCTTTAGC 38385 37 100.0 36 ..................................... ATATTCATATGGCGAGTTCTTGCGTACCCTGTGCGA 38458 37 86.5 0 .............................GC..G.CG | A [38485] ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.1 38 GTTAGAACCAGCGCCCCGACGGCGAGGGGATTGAAAC # Left flank : GGAAGCCCAAGACGGCCAGTCGTTGGAGCGAGGAAAGGCTGGCAAGGGCTGGCCATGGAGCCTGCCAGCGCCAGAGATCAAGGGTATCAGGATCAGGCAGGGGGTGATCCCCATGCCACAGGGCGTAGAGCAGGGCATAATCGGCAGCGGTCAAGGATTGCCGGACAAGGCGACGATATGCCGGCGTTGTCCAATGGCACAGCAGGTCGGTGGCAAGGCCCGCACGGGTTTGGGATGCAGGGCGTTTATAGTGGGTATAATGGGCCAGCGTGCGCAAGGTGCGAATGGGAACGGACGCAAACGCGTGGGCGGTGAGGATCTTGACAGGCATGGGAGAATAGGGCATAACACGACCTTTGATTGGACAGGGAATGATCGATGCAACCGCTTCAAGTTTACCATAATTATACTTGTGGTGCATGGCACAAATCGCGTGGCATGCATCTCGGCTGGCAATCCACGCGGGGAGCTGCTCGCATTCCGAAAGTGGACACAGAGGA # Right flank : GAATTCCTGAGGGGTTTTGGCAGGTTTTTTCGCTGATTCGCGCCGCCGCTGGCCGATCACCACGCAAGGCGTGGTTTTTTTGTGGGCCGACCCGATCCATCGCCCGTTATGCTGCCCGCAATCCCGCGCAGCGGTAGCCCATCGGTGTGCTTCGTCGCCGCGTTGGCTGATGCACGGACAATCCTCGCGTAGGAAACGCTCCCCATCGCCATTGACCGCGTTCTGCGGTATACTGCGTCAACCAACACCGCTATCCCGGTGGGCATCGTTTCGACACGACCCACCGGGCCATGCAGGGAGTCCATGTATGCGACCTGACCTCCCACTCCAGCGCTTCACGGGGGTTGATGACCCCGCCAAACCGGATCACTACGTCACCAAGACCCACCTCACGGCGTGTGGCCTCATACCGGGCGATCCTGTCGCCGTTATCGTTCGGCCTAAACAGCGCAAACCCATCTATCTCTATGATCGCCACCACGCCGTGCCCCGCCAGTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAACCAGCGCCCCGACGGCGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 149-2259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000026.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 149 37 100.0 40 ..................................... CTGGCGTTGATGACCACGAAACCGTTGTGATCGTCGTAAG 226 37 100.0 38 ..................................... CTCCTTTGACTTCCACAGTAGCGGGCAGGCCATACACA 301 37 100.0 39 ..................................... TTAATATCGGCGGTGTAAAAATTACACTTGGCAACAATC 377 37 100.0 39 ..................................... TCCATTCGTACAAAAGCATAGCCATCTAACGATTGTTCG 453 37 100.0 41 ..................................... CAACAAAACCACGTAGTTTATTCAGGCTATCAACGCCTTTG 531 37 100.0 41 ..................................... TCATGTTGAATCTGAGAAATTCTTTACAATGCAAGGTGATT 609 37 100.0 43 ..................................... TGATCTTAAGCTTGTTGGTGCTGGCCGCACTGGGTCATTTGTC 689 37 100.0 42 ..................................... CGATAACAATAAGCCATAGAATAAGCAAAACAAAGAAACTTA 768 37 100.0 38 ..................................... CCACATTCTAAGCATGACTTATTGATAGATGTTCCATT 843 37 100.0 40 ..................................... TGTGTGGTGATGGCTCAAATAGCCATTTATGGGTCGATGC 920 37 100.0 39 ..................................... CTTGCCTTGGTGCTGCCATTATGGCGCTTGGGCCTGACG 996 37 100.0 40 ..................................... GAAATTTAATTATTGCAGCCTACAATTCCTATAAAAAGAA 1073 37 100.0 38 ..................................... CTTTCACTGGTTTTGCCATACAATCTCCTATATCCAAG 1148 37 100.0 41 ..................................... TGCTTGAGCTGTGAGACTAATCCGTTTCAAGGATGCTTTTA 1226 37 100.0 41 ..................................... TCTGCTTCACATCCCGCACCCATACATTTGGGAATTGATGC 1304 37 100.0 40 ..................................... GCTCAGCATCAACCGCGTCATGGGCTGCCAGTCTTCATAG 1381 37 91.9 39 ............C.C.......G.............. ATGTCCTCTAACAAAAACTTGGCAATGCTCTGGCTGTCC 1457 37 89.2 41 .......G....C.C.......G.............. CGGATGTTGCGCCAAACGGGCAAGTTGTACTCGTAGATAGG 1535 37 94.6 37 ............C.C...................... TTTTGAAATTAGCATACGTCCTCCTGTGCCACTATCA 1609 37 100.0 44 ..................................... AGGCTCTTTTTTACTAGTTAATTTGTGCTTGGATACGAAAAAAA 1690 37 100.0 40 ..................................... CGATTCACATGGTAGGTTTTCCCATAGATATGATCCTTAA 1767 36 97.3 38 ...............-..................... TCAAGCTAGAGCCATTCGCACACACATCACAATTGAAA 1841 37 100.0 38 ..................................... GGCGTTCTGGAATATCAATAGCGACAGTAACTGTATTG 1916 37 91.9 40 ....A.......C.C...................... TGAAGGCCGTTGGCGCTCCAATTGCGCCCGCAGTCTTTGA 1993 37 94.6 38 ............C.C...................... ATAGGTTGGATACATGGTGGCAGGCTTGCGCGTGGTGA 2068 37 94.6 40 ............C.C...................... GCCTATTGTGATGTAGGATTCGCCCAAGTGGGCCTTGTAA 2145 37 94.6 40 ............C.C...................... TGGCAACTACAGCGCACCAACGCTGTTGGATAAAATATTA 2222 37 89.2 0 .............C............A.......T.G | C [2232] ========== ====== ====== ====== ===================================== ============================================ ================== 28 37 97.8 40 ATTCGAATAACCAAAATCCTCGTCAGGGGATTAAAAC # Left flank : GTCATGGTGATGGCTCCATGAACAAGCGATGCTGTGCTGAGCATGCCATGGAATCGGGCGCTTGTCGAGACCCCTATGGATTGTGCAACACTCTGGTCAGGGGATTAAAACATAATAGCGGCCACCAAAGCACCAATACCAGCACTACA # Right flank : GCAGATCGGGTTTTGGTGGGTCGGGTGGGCATCGAACCCACCTAAAACCTCATTTTCTCATTTTGCAAGGGTCGATTTTTAGCGAGGTATTGAAGCGCAACAACGATTATTGATCACCACCCTTCCGTCCCGCCTCAAGGCGGGAGACGCAGGGGTTTTCATCCCCTGCACCCCAAATATTTAGGAGTTGGAATGTTACTGTGATTCTATACCCCCAAACTTCGTGTGCTTCGCGATTCTTCATTGCTGATCCCTGACCCCTGATTACGAGACCCTCGTTCACCACCCTTCCGTCCCGCCTCAAGGCGGGAGACGCAGGGGTTTTCATCCCCTGCACCCCAAATATTTAGGGGTTGGAATGTTCCTGTGATTCTATAACCCCAAACTTCGCGTGCTTCGTGAGCTTCTAAGTATTAATAACTATTGAAATTAAAAAATGGACGGATTTTCGTGCATTGCTCGAAGATTCGTCCATTTTGTATTTAAGGGCTATCAAGGCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCAAAATCCTCGTCAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 110-3831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000037.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 110 37 94.6 37 ...............C.................G... TTGCTGGCATTGCCTACCAGATTGTGGTCAATCGCAC 184 37 94.6 36 ...............C.................G... GCCGCAAACGTGGACGCTGCGCGATGATGGTATCAA 257 37 94.6 34 ...............C.................G... GCCTTTTTTCTTCGGCTGTAAGACAATCGGGAGT 328 37 94.6 37 ...............C.................G... GGCCACAGCGAGGACACCAGCGCATGCGCTCAAGGCT 402 37 94.6 34 ...............C.................G... ATTCACCAAAGCCTCTGGGCTGAACTGCCTAAGT 473 37 94.6 36 ...............C.................G... CCGATGGCACGATGATGTCGATCAACGGCATGGCAC 546 37 94.6 35 ...............C.................G... AACGCGCCGCCGATGATTAGACCGCCTGCAACTGC 618 37 94.6 33 ...............C.................G... CTCAATTTTTTCAAGCCCTTGCTCGATCAGATC 688 37 97.3 35 ...............C..................... ACGTGCCTTCGTTTTCAGGTAGCGCGGCGTGGGCT 760 37 100.0 36 ..................................... GTTGCCCCAAATCAACAATGATTGCCCTGATTGCAA 833 37 100.0 37 ..................................... GAGGGCGAGGTGTCGAACAAGGCTTTTGACGATTAAC 907 37 100.0 34 ..................................... ACACATCGAAAGCAACCACCTGTTAGGAGAAAAA 978 37 100.0 36 ..................................... TCGTAGCTCCTGTAGGTTAGTTGGCTTGGTCACTTA 1051 37 100.0 36 ..................................... AGTTCATTTATTGCACCTCTTCAATCGCTAAGTCAT 1124 37 100.0 36 ..................................... ATGCAAGGCGTGATCACGAGCGTGGAATATGAATCA 1197 37 100.0 33 ..................................... ATTGTGTAGTACTCGTTATAGTATGGTTTTGGT 1267 37 100.0 34 ..................................... GCGGGGTCGTTCTTGTTTGCGTCAACATGACCGT 1338 37 100.0 38 ..................................... TATCGCGCAACAGGCTGAATCCATCGTGGTCAACGCGT 1413 37 100.0 32 ..................................... TTCAGCTTCAGCGCTCTTGATCGACGTGGCTA 1482 37 100.0 35 ..................................... CGCCAAAATCGTTAGCAAACCACTTTGTACCAGTT 1554 37 100.0 36 ..................................... TCGGAAAGTGAGGCAACCCATGGCACACGTTCGCAA 1627 37 100.0 36 ..................................... CCTTGGCCGCGCCACGTTCAGTAGCTTTGACCCTAG 1700 37 100.0 35 ..................................... CGTTATAGCGGCGGTTGCGTTTGGCGGTCTTGCCT 1772 37 100.0 34 ..................................... ATAAACCAGCCGTAGACCGCTGCCATGTAGCTGA 1843 37 100.0 36 ..................................... GCGTTGCGCCTTGACGTTTGATGAATTGGTCAAAAT 1916 37 100.0 38 ..................................... ATGACCGGCCTTGCTGCCGATGTGGAAGCCGCAGGCAA 1991 37 100.0 37 ..................................... ATTGACGCAAACAAGAACGACCCTGCTGGTTTCGACT 2065 37 100.0 36 ..................................... TAATTAATGGCCGAACGTCCGCAAAGTTTACGTCAA 2138 37 100.0 35 ..................................... TTCCGCTCCCATTTTGAAATGTATCTGGCAACGCT 2210 37 100.0 35 ..................................... TTACAAAAGGGAATGCAGCGCGCGATGTTAGTGCA 2282 37 100.0 36 ..................................... CCGGCTTCCTCAGGAAGTGCAGGAATCGTTTCTTGT 2355 37 100.0 35 ..................................... TCAGATCGCACGCCCGATTAAACAACCCATTGATC 2427 37 100.0 35 ..................................... AGCTTTGCGATGATACTGGCAACCTTGACCGAGCA 2499 37 100.0 36 ..................................... ATATAGCTCGACCATAATCATGGCCCGCCTTCGCGC 2572 37 100.0 35 ..................................... CACTACTTGACGCGATTACAATCGTCCGTGTTGGT 2644 37 100.0 37 ..................................... TCATTCCGGCGTGCATCGGGGTTGCCTCGTTGACGGT 2718 37 100.0 36 ..................................... CAGACGACATCAAACGCGAGCGTGTTCGGTTGTACT 2791 37 100.0 34 ..................................... CTGCTTGGGCTTGGGCTTCGACTGGTTACGGTAC 2862 37 100.0 33 ..................................... CCAGCCTTGCTGCCGTTGGGCAAGTGGTGCAGT 2932 37 100.0 37 ..................................... CATACGATCGTCTTTTTATCTGTGGTATACTATCTGT 3006 37 100.0 36 ..................................... AAGTTTTTTATCGCAGCGGTACACACTCAAAAGAAC 3079 37 100.0 35 ..................................... TTGCCGTTGTAATAGACTTCGTAGCCGCCGATAAC 3151 37 100.0 35 ..................................... TTCGTTGTTTGCCGCGTAGAGACGATAGAGGCGCG 3223 37 100.0 33 ..................................... CGATGCTTTTGGCGAAGCTTGCGCCCTTGCCCT 3293 37 100.0 37 ..................................... TAAAACCAGTACATCCTGGCGATATCCGGTGGTTGCA 3367 37 100.0 36 ..................................... AGGAAAGTGAGGCAACACCATGAGCCACAAACGCCC 3440 37 100.0 32 ..................................... ATTCCAGTATCTTGATAGATGATGGACTTAAT 3509 37 100.0 34 ..................................... GAAAAAGCCTAAAAATGGGGGTGAAATAATTTCA 3580 37 100.0 35 ..................................... TTTATTCGATTGTGGAGTTAAAAGCCCAAAGGTAA 3652 37 100.0 34 ..................................... ATGAACGCTGGCAATCATTCCGCTGGCTCAAAAT 3723 37 100.0 35 ..................................... ATGCTTGGCCCTGCTGGGCAGCATTCAATATTCGG 3795 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 52 37 99.1 35 GTTTCAGTATCCTCTATGCGGATCGATTAATTGAAAT # Left flank : CCCGCCACTCAGTGTGGCTGCGCAGGCCGACGACCCGGCGCGGCTGAAACGGAATTCCTGATCGTCACCCGTCTCAAAAATATTGACACGTTCCGGACTGCGCTCGTTGG # Right flank : TCGCCGATTTGTTACGCGCTTGCGCCTAGGTAAATCCTGCGGATGCCGCATTCTACGCCGCAGCGTCAAGTGTAGCGTCTCGGTTGAAGCTTCATGCTCACGGTATCATACTCGATTCTAGGGCTGTTTCGCAACTCGAATTTTGGGCGAAAAATGGGGGGAGTTGCGAAACAAAGCTAGGGCTTTGCAATCAGCTATATCCACATCCTAACTCGATCAATCCTCCCACATTAGCCAAAAATCAGCCCTCAATTAATCGAGTTGCGAATTCGGCGCTGCGCTGGTCAAAAAAAACTAAAGCACATCGTTGCAGAAGCGGCGAAATTCACAATTTACGCAAATTGCTTGTTGCTTGGGCGCTGCTGGCATCGTTTCATGGGCAATCAGCTGATGGATTTGCTCAATGCTCCGCTCCACATCATTCAGCAGCCGTTGGCCCAACGGAATTTCAACTGCCTTACGCAATGGCAAGAGGTAGCTAAATCCACGCCGAACTGGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTATCCTCTATGCGGATCGATTAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 5072-4522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000040.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5071 36 81.1 37 ....T....CCA....TC-.................. CCGAGCCGCAGTGGCACTACCTTAACCTGAATAACCT T,A [5066,5070] 4996 37 100.0 33 ..................................... GCAAGCGTCATAAGCGTAATGCCCACTGGCTTG 4926 37 100.0 36 ..................................... AGATGAGAGGTAGTTCATTATTCTGTTAGGAACTAC 4853 37 100.0 40 ..................................... GAGAACCACAAGCAACGCGATAGCCAGACAAGCAGAGAAG 4776 37 100.0 37 ..................................... TCGCATTGACCGCACCAACATCTTCCAGGATGTCCTT 4702 37 100.0 34 ..................................... AAATGGGTTTTTTTCATAATATGCTTTTGCGTCT 4631 37 100.0 36 ..................................... TTTGTATATTTTTTGATTGATTTGTCAGAAATTTTA 4558 37 86.5 0 ...............................C.GTTT | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 96.0 36 CTTGGAAGCATCGCCCCGACAGGCAGGGGTTTAAAAC # Left flank : CGGGATGGCGCAGGAGATAGCGGCGCAGATGCCCCATGGAGGGCAATTGGAGATCGAGTTTGAGGAGGAACGCGGCGAGAAAGGGGGCACGCGGCGCGGGACGCGGCCCCGGCCGAGGGCGGTCACTGAGCGGCGGCAGGGCATGCCACGGAATGGGGGCGAGCCACTGATGGGCCGCAGCAGCGGTGGGATCAGCGGCAATGATCGGGGGGAGATCCGGCATGGAGAGCGGGCAGGGACGACGGGGATGGGTGGGTAGCAGGGCACGATCGGACACGGGCACGGTGGGCACAGGGTGCTTGAAGCGACGAAGGATGTTTGGTATGATGCGATCCAGCATCAGCGACTCCTATTCTGGGGATGGTTGGATCTGATACCCGTATCGTACCCGATAGCGAGTCGCCTGGTGTCGAAAACGACCCCGATTGGGGCATGGGTGTCGCGCTACGGCGGATCGGTGTCGCCCCCCGACCCTGATGGATCGGGCAGGGGAACCAATT # Right flank : GCATGGGAGCGTGATTTTTTTGCGGCATCCCATGGCGAGCATGGGCCTGTCGTGTGCTAGGAGGAGGGTTCCTATGCGTCTCTATGATCGGTTGCGTTGGAAAATCGGGCTGCCCACCGTTCCCGTGATCGATGCCTCATCGATTGCGGATGCTATCGACGCGCTGCCTGTCGATGTGCCTGGCTATCCCAGCGCCAGTTATGGTGTGGTCGCTCCGCCCTTCACATCGTTTTTTGTGGAGGCAACAACCGTCGTGGAGCCAGACAACATCATGGCCCAACGGGGTGTATTGTTTCGCGCGACGACTGATAAAATTCATCCTGCAACCCCTGACCGAACGCGCTGGACGATGACCCTTGAGGCATTTATGCACGTTAAGGGAAACGGAACCTATGGCTATCATGGGCTGGCCGTGATCTTTCTTGATCGAGAAGGAAAGATCATTAACAACATGCTGAAAGGTGTTCTGCTGCTGCCGAACCCCACCCAGTATGCGAAAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAAGCATCGCCCCGACAGGCAGGGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 7242-6977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000040.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 7241 37 100.0 36 ..................................... ACTTCCTGTACTGATTGTTTTATCCCTCATGTCTAC 7168 37 100.0 37 ..................................... CCGGTGCGGGGGTTGTTGTCGTGCTGATAGGTCCACG 7094 37 100.0 43 ..................................... CCAAGACGGACGCAACGGGGCATGGATTGCGCGACCCCTCAGT 7014 37 83.8 0 .............................GC.GG.CG | A [6979] ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 96.0 39 CTTGGAAGCATCGCCCCGACAGGCAGGGGTTTAAAAC # Left flank : CAAAGGTCTTGACCACTGTTGAAGAAACCGTCCTCGCTGGCATGCCTTCGCCAATAATGCAGGCGATGTTTCAGGCGCAGCTGGAGCAGGAAATCGCTGCGCAGCGGGCAGCACAGATCGCGTATCACCGCGAACAAACCAAGGCAGGCATGGAGGCGGCGCGGCAGGCGGGTGTGCATGTTGGCCGACCCAAAGGCTCACGCCAGGCGAACGCGGTGTTGTTGGCCAAGCCCAGTAGTCAGGCAATTATCCAGTGCCTTGCAGCAGGCATGTCGTTGCGCGAGACAGCGCTGGCTGCTGGTGTGGCGGTGAATACCGTGCGCAAGGTAAAAGCGGCATTGGGAGATTGACAGGGTTGGTACAATGGACACAGCAACGGAACGAATCGCTTTTATTTGACATAATTCAGTGATGCTCTCTATGCTGCAAGTACGTGGTCAATTGGCAGGACTGAATGTGGCTCAGGGAGTTGATTTATTTCCGAAAGTGGACACAGAGGA # Right flank : AATTCCTGAGGGGTTTTGGCAGGTTTTTTCGCTGATCCGCGCCGCCGCTGGCCGATCACCACGCAAGGCGTGGTTTTTTTGTGGGCAGATCCGCCCCATCGCCCGTTATGCTGCCCGCAATCCCGCGCAGCGGTAGCCCATCGGTGTGCTTCGTCGCCGCGTTGGCTGATGTACGGACAGCCGATCACGCCGACCGATCATCCCTGATCCGCCGCTGTGGCCGTTGCCTGATCGCTGCGGCTGCGTCCGTCCATCCATCCAAGCCATCCCCATGGCGATTCACGGACGAGACGCATGCCACCTTAGGCGTGGATCGGGTCGTGTGTTCCCTGCTGGCGATGCACCACGCGCAGGTTAATCACCACATAGATTAAGGATGTCCACGCCGCGACCGCGCTTTGACGACGCAGTTTTGGCCATTCGATCCCCAAGGCATACGCTTGGCTGTTGATCTGTTCGACCAACGCGCGTTCGCGATACAAGGCTTTATAGGTCGCTGA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAAGCATCGCCCCGACAGGCAGGGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 9386-9126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000040.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9385 37 100.0 35 ..................................... GTTGGATCAGCAAATTGTTTTACGAATAATTGGGT 9313 37 94.6 39 ...................T..C.............. TTTAATAGCATCTTCTGATAGATCAATATAAATATTTAT 9237 37 100.0 38 ..................................... ATGAGTTTCGCCAATTCGCTTTGAGCAGAACAATTGTC 9162 37 91.9 0 .................................TC.T | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 96.6 38 CTTGGAATGGCCTTAATCCCCGTGAGAGGATTAAAAC # Left flank : AGAAAACTGGAACCGGAGCTATTTTACATAGTTACTGGCCTGACAGTCGAAGATTTCCAACTGCTCGTAGAGCTTCGGGTGTTTAACACCGAGCAGATGAATCAGGCCGTATTTGCGTTCCGTCGGTATGAGGATGCATCGCTCCGCTATACGGGCATCGAGAGCCACCCCAATCTAACGCACTATGGGTTGTATGATACTGTTGTTGCGAGAGATTGAACGTATAAGGCATTTGCACGCCATAATGCGTTTTTGGCAGAGTTAGGCTTGCTCCCGCTGCCGTGATAACCAGGCGGCATTCCCCACGGCACTGCGTGTGTGCCGTGGGGAGCGAGCATTGATCATTGACAGGCTTGATACAATGGACACAGATTGTAAAGCAACTATTCCTTGTTTGACATAATTATTATCTCTAAGTTCATCGTGTATGGTGGTGGTTACTCAGTGCCTCTGAATGCGGCTCGTCGAGCAGGCACATTTGCAAACGTGGACACAGAGGA # Right flank : TAACGAACCAGCGCCTACCATACCGCTGGTTTTTCTTTTGTCCTATATCCCTCACGATGCTGGACTAGAATGGAAGGTTTCTCACAAATCTACCGATGCTGGAGCATCAGGGCTTCCCGAGGGCTTTGACGAATCATGAGACAGAGATTTTTGAATTTCGTTTCGATCATGCCAGAAATCGCCTGTGTATGGCTCTGAATAGAGCAATGACATAGGAGGTAATCATGCAGAAAGCAGACGCGCTGGTCCAGATTGAAGGCATTATTGACGATCTCTCGAATGGTGAGCTATTCGAGGAAGTCGGCGAAGTAGGATTCCTACTGCTACGTGAGGCGCTGGAAGTTGTCCAGCTGGCGCTTCAAGGGAAGATATTCCCAACCGAAGCAAACCAGAGGCGGCTTATGGAGATTATTAATCAGCAGTTGGCCAATCCGCCGGATGAACACCTGAATTGAGGATTGCCCGTGTTTTTGCATGGTTCGTTGTCTTCTACAGACCCC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAATGGCCTTAATCCCCGTGAGAGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 30346-30008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000047.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 30345 37 100.0 37 ..................................... GCAAAGACCCGCCGCTACACCAGCTATGGTATAACGG 30271 37 100.0 38 ..................................... GGGTTTGGGCAATCGCAATGCGCGCAGTTTCTTCATTG 30196 37 100.0 38 ..................................... AACATGAGCGCACGGTCGAGTCAGGCACGCGCTATCCC 30121 37 100.0 40 ..................................... CGACAGGGAGTGCCCAAGACGGCTTTGCGAAGCCAGAGGA 30044 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 38 GCAACACTCTCCTCACGAGGATTTGGGTTATTCGAAT # Left flank : TGGTGTGAAAGGGATGCGATGGATGGAGGGTGGTATTAAAAAAAAGGTTCGTAATTGGTGAAGAGCAGAGGTAGGGTGAATTC # Right flank : ATACCCCAGTTTTCATGGCTTTGCAAGGCCCTAAAACGCGCGCTTTGCGCGGTCCGCCGCAAAATGCTAATTTTCAGGTGTTTTTGGCTCATAAAAACCAGCCTAAAAACGCGTTTTAGCCCATTCTAATGCGATCGTGCGGCTCATAAACACATTTATGCCCCTACATAGCGCTAAAACCACAAACGGCTCGCATAATGGAGCCGCTTGTGGGAGAGAAGAGAGAGGAGAAGGTTTGATTGCATTATACCATCATTCTGGCGTATGATCAGCAACGGTCATGGTTGTAATCAACGACATTGCTACATGGCCTTCAAGTACGCTCATCGCATGATTATGGTGAATCGAAACAACCGTATAGCCCGCCGCAAATTCTTGGCGTAAGCTTGCCTGAAGCTCAGCCATATTGAGCGCAATCAACGATTTAAGCAGCTCTTCCAACGATAGATTGATCGCCGCTGTGCTGGGCCGACTGGAAGCACTTGCTAAACTCTGCTCAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACACTCTCCTCACGAGGATTTGGGTTATTCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 720-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000045.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 719 38 94.7 37 ......T...............G............... GATGAGCATGTAGCGTACTCGCCGCCCGTCCAAGTCC GA [716] 642 38 86.8 37 ......T.....G........CG..C............ CCGTACAACCAGCGCCCTGCCGTTCTGGCACTCCGTG 567 36 84.2 38 --....T.....G........CG............... GAGCCAGGTGCCGGGTCATCGCCGTGGGGGTGTTCTCG 493 38 84.2 38 C.....T.....G......C..TG.............. TAAAAGTACTCATTCTTGACTGCTTCAAATACTACCGA 417 38 97.4 39 C..................................... ACCGAAAATGTTGGATTACGGATGGCAATCTTGAAATCC 340 38 100.0 37 ...................................... TTGAACTGTCGACTGGTTTCCCATTTATGTACACCCT 265 38 100.0 37 ...................................... TTGAACTGTCGACTGGTTTCCCATTTATGTACACCCT 190 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 8 38 93.4 38 GGTTCAACTCACTGCCCCGACGACGAGGGGTTTAAAAC # Left flank : AGCAGCAAGCCCAGCACCGCTAGCCGTTGGAGCGAAGAGAGGCTGGCGAGCGCTTGCCATGGCGCGTGCCAACGCCAGAGATCGAGGGTTTCGGCGGCGGGCAAGGGCTGCGTGCCATGCCAAAGGGCGTGCAACAGCGCATGGTCAGCAGCGGTAAGCGAGCGCCGAATGAGCTGACGATAAGCTGGGGTTGCCCAATATTGCTGGATGGCAGCGGCCAGTGCAAGGCGGGTTTGCATTCGTTCACGACGAATGTGGCTATAATGGGCGAGGGTGCGCAAGGTGCGAATCGGTACGTGGGCCAAGGCACGGCTTGCAGAGAGCTTGACAGGTATGCGAGAATAGAGCATAATGAATCCTTTAGGTGGACACAGACGCGAGAAAAATGCTGCTTAAGTTTACCATAATTTTTATAGTGCTTCATGGCATAGTTGTTATGGTATGCAAGCAGGCTAGCAACCAGCGCGAGCAGTTGCTTGATTTTCAAAAGTGGACACACA # Right flank : CGACGGGTTGTATCCCAGAAACGCATATTCAACCCTGGTTCAACTCACTGCCCCGACGACGTTTAAGGGCGGACAGGTTGAGGAATAGCTATCAATAGATGTTAGGCCATTTCCAAGCCCAGTCGTCTGCCCCGCATCACCGTCGTTGCCCAG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCAACTCACTGCCCCGACGACGAGGGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 3801-4055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000045.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3801 37 100.0 35 ..................................... GTTGGTGTCGCGGACGGCGTTCGCGTTACCGTTGG 3873 37 97.3 36 ...........G......................... TCATTCTCCCCCCAGAAGAGATCCCCTTCGGGTTTT 3946 37 100.0 36 ..................................... GCAAGCTAGTTCCAGCCTGTAACCAAGTGCCGGTTC 4019 37 75.7 0 ..................A........A.AACGT.TG | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 93.2 36 GTTCATCTCACTGCCCCGCCGTGGAGGGGTTTAAAAC # Left flank : CCTGAACCGCTGAATAGCTCATGGCTTGAACGCTATCTGCAAAGCCCGTTTAAACAACCGCTTGAACCAGTGTTGCTCAAGCAGGTTGTGTAGGGACTGATTGGGATTGAATTGCCACACCACGCCATGCTGGTCACAGCGCAATTAGCGCAACATCCAAAATCCGTTAACGTAGCGTTTAAGCTGCTAACCATGGTGATCGTGCTGCTCATTATGGGAGTCCTCATGCTCTAGCAGCATTGGGCTTTCTGCGCTAGAATTGGAGCTATGCGTAAACAACGGCGTTCGGATGAGCGTCGTTGTTTGCTGAATGGAAACACCATAGGCCAGCATGCTTCACAGAATGTGTATACTTGAAAAAGTGGACCCCTTATTCTACCTAGTCGAGATTAAGTTTACCATAATAAATTCCAGGCTTAAATAGTGCTTGTCTATGGTCAATGAACAACCCTGCATGTATCTACCAGCGCACACTCATTTTAAAAAGTGGACACACAGGA # Right flank : GGCTTTTGGCTTTTGGCTTTTGGCTAGCGGAGGCAGGGTGGATACTTTATAAATTCGGGCTGATAGGCAATAATCTGTGCTAATCTGTGGCTAAAAATAATGTCATTCGTGGAATTCGTGGCTAAACTTTAACGCAGAGGCGCAGAGAACGGATGGTGATGGGCTATTGGCTTTGGAGAATAAGAATCTGAGCTAATCTGTGTCAATCTGTGGCTAAAAATAATGATTATTCGTGTTCTCAAAAGCCAATCCCCTGTAGCCGATAGCCAATAGCCAATAGCCGTATTCTCTTTCGTGGATAAACAAAACAATGGGGATTGAGCTAGTCCCAGCCCGATCTCGTTATTTCAGCAGTTTATCAGTTCAATAACATTTGAATACATCCTGTGCTTGCTATAGTACGAGAGATCCTAGTTTATGAGTGAGGACAGGAACCATGCGCAAAGCTTGGTGGATTGGGTTTTGTGGCCTATTGAGCGCTTTATACTTGCTTGTAGCGT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATCTCACTGCCCCGCCGTGGAGGGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2261-83 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000052.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 2260 37 86.5 35 ....T.T.....C.GC..................... GTTGGCGTTGCCTGCCAGCCTAGCTCAATGATGAT CC,G,TG [2240,2248,2252] 2183 37 100.0 39 ..................................... TGTTATTTTGGCGCGGATTTCTATGCACGGGTCTGTACC 2107 37 100.0 40 ..................................... CAAGATTTGATAGGGATCAAGCAAGTCATACTTGCCAACC 2030 37 100.0 42 ..................................... AAACAATAGGTGTCCGCAGCGGCCTCGGCCTGTGCTTCAAAC 1951 37 100.0 36 ..................................... GTAAAATGGCTTGACTTCGGCATGGCGCACTTCAAG 1878 37 100.0 36 ..................................... CGAGCAAAGCGAATAGGCACACCAATTGATCAATTG 1805 37 100.0 39 ..................................... CGCTTGGTACTGATTAGGTCGGGGTTGCGTTCTTTGGTC 1729 37 100.0 40 ..................................... CCACCGTGGCGGCTATCGAATCGTGATTGTTGCGATCAGG 1652 37 100.0 39 ..................................... TGAGGCCAAGCGACGAGCGGATGCTGAGTTTGATTATCA 1576 37 100.0 38 ..................................... AAACCGTTGCGCCTAACAACCCATCGAGGGTTGAGAAG 1501 37 100.0 48 ..................................... GCGGCCAAAATCGCGAAGGGCGCAAGCCCTCACCGCGTGGCAACGGCG 1416 37 100.0 45 ..................................... CCACCGCTACGCCGTCTTGCAGGCGAATTGTGGTTCTCAATTGGC 1334 37 100.0 39 ..................................... TTTGTGGCGATTCCTGCCTTGGCATGGCCACCACTGAAT 1258 37 100.0 41 ..................................... CTTATTTGAGTAAGCCCATTGTGAAAATGGAGCGGTTTTCT 1180 37 100.0 38 ..................................... GTGCTGTAAAGCGACACAGCACAAGATCATCAACCTTG 1105 37 100.0 39 ..................................... CCATTCGATAAATGGTATGGATGCGGCGCGGACAATTCC 1029 37 100.0 44 ..................................... CCAAAAGAAACGCTTTGCCCTGCGGATTAGCCAGCATCATAAGG 948 37 100.0 36 ..................................... TGATATTGCCGTGCGGATTACCGACGGTGAATCAAC 875 37 100.0 38 ..................................... CAACGATCTAGATAGTAATATTGTTAATGTATTTAAGG 800 37 100.0 35 ..................................... AGCTAATTACTTACTCAAGTATTACAATGAACAAA 728 37 100.0 40 ..................................... GCATCATTATGTTGTTCATGGTTCCTTGCATAAATAATAC 651 37 100.0 35 ..................................... GTATTGTAAATATTCCAACGTAGCCACTGCTACCT 579 37 100.0 36 ..................................... CGCTTGAGCTTCTTAGACCCGTACCCGCTAACAATT 506 37 100.0 40 ..................................... CCGTCACCCTCGTTGGTGCGACGTGCTTGGAAGGTGAAGC 429 37 100.0 44 ..................................... TTCTCTCGTATGAGCGCATCAAGGCGCGCTCGTCGCGGTCTTTT 348 37 100.0 39 ..................................... CGATGGTAAGGCGCAAAAGCCCGTGTAGCAGCACTCACA 272 37 100.0 41 ..................................... GGAGCCGATTATGATACTCACTAATCAACAGGTATGGTTTG 194 37 100.0 38 ..................................... GCCAGAGACCCACACAATAGGCCAAGCTGGCCGTCGCG 119 37 83.8 0 ...........................A..G.GTTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.0 39 ATTCGAATAACCAAAATCCTCGTCAGGGGATTAAAAC # Left flank : GGGCGGGATGGCGCAGGAGATAGCGGCGCAGATGCCCCATGGAGGGCAATTGGAGATCGAGTTTGAGGAGGAACGCGGCGAGAAAGGGGGCACGCGGCGCGGGACGCGGCCCAGGCCGAGGGCGATCACTGAGCGGCGGCAGGGCATGCCACGGAATGGGGGCGAGCCACTGATGGGCCGCAGCAGCAGTGGGATCAGCGGCAATGATGGGGGGGAGATCCGGCATGGAGAGCGGGCAGGGACGACGGGGATGGGTGGGCAGCAGGGCACGATCGAACACGGGCACGGTGGGCACAGGGCGCTTGAAGCGACGAAGGATGTTTGGTATGATGCGATCCAGCATCAGCGACTCCTATTCTGGGGATGGTTGGATCTGATACCCGTATCGTACCCGATAGCGAGTCGCCTGGTGTCGAAAACGACCCCGATTGGGGCATGGGTGTCGCGCTACGGCGGATCGGTGTCGCCCCCCGACCCTGATGGATCGGGCAAGGGAACCA # Right flank : CAGAATTCACCCTACCTCTGCTCTTCACCAATTACGAACCTTTTTTTTAATACCACCCTCCATCCATCGCATCCCTTTCACAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCAAAATCCTCGTCAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4358-4174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCZ010000052.1 Herpetosiphon giganteus strain DSM 589 Ga0454001_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 4357 29 100.0 49 ............................. GGATTAAAACCGTGATTGAAAAGATTGAATCCTGTAGTTATGGAGATAA 4279 29 100.0 48 ............................. GGATTAAAACGTATTGCCGCGATTATTCGCGAGCGCTGCGGCTCGCTG 4202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================= ================== 3 29 100.0 49 ATATTCGAATAACCAAAATCCTCGTCAGG # Left flank : ACAACACGCTAGGAGGATCGATGCTCTATTTGATTTCCTACGATATTGCAGTTGACAAGCGGCGCACCAGAATTGCCAAAATTCTTGAAGGTTTTGGTCAACGGGTGCAATATAGCGTCTTTGAATGCGACCTAACCGCCAAGCAATATAGCAAACTGCGGGGTAAACTGCACAAAGTGTTGCGGCCTGCTGATGGCGATAATTTACGCACCTATCGGTTGTGTGGAGTTTGCGCGCCGCACACCGAAATTGTTGGCAATGGGCCAACGCTTGAAACCAGCGTCACGATTTATATTTTTTGAAATATGGCTCTAGCGTGGGCCAAACTGAAGTTATCCACAATTTAATGTCCATAAAATGCCGCGCGATCCGATTCTGAAGGGCAAAAAGCGAGTTATCCACATGCAAATTTACTTAAAAACCCGCCAAAAAATGCCCAAAAAAATCGGACCGCGCAAAGCGTTCGTTTTAGGGCCTTGCAAAGCCATGAAAATTGGGGT # Right flank : AGGGCTGGACGAATTCCTGAGGGGTTTTGGCAGGTTTTTTCGCTGATCCGCGCCGCCGCTGGCCGATCACCACGCACCGGCGTGGTTTTTTTGTGGGCCGATCCGACCCATCGCCCGTTATGCTGCCCGCATCCCGCGCAGCGGCAGCCCATCCGCGTGCTTCGTCGCCGCGTTGGCTGATTCGCGGACAGCCGATCATGCCGACCGATCATCCCTGATCCGCCGCTGTGGCCGTTCCCTGATCGCTGCGGCTGCGTCCGTCCATCCATCCAAGCCATCCCCATGGCGCTTCACGGACGAGACGCATGCCACGTTAGTCGTGGATCGGGTCGTGTGTTCCCTGCTGGCGATGCACGACGCGCAGGTTAATCACCACATAGATTAAGGATGTCCACGCCGCGACCGCACTTTGCCGACGCAGTTTTGGCCATTCGATCCCCAAGGCATACGCTTGGCTGTTGATCTGTTCAACCAACGCGCGTTCGCGATACAAGGCTTTA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTCGAATAACCAAAATCCTCGTCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //