Array 1 233-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960249.1 Peptoniphilus sp. DNF00840 Scaffold276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 232 33 100.0 33 ................................. CTTGAAGACTTATACGAATATTGCAGGTTATAT 166 33 97.0 35 ................................T TTATCAATAATAACTAACATATTTCCTCCTTAAAC 98 33 100.0 34 ................................. GATTAAGATTAATTGATTTCCATCAATCATATTT 31 31 93.9 0 ...............................-- | ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.7 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : GAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAGGAAATTCTATGACACGTTGGGCGAGTATGGAGTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATACCTTGATTTATTACTTTCAATTCTTTGTATCGGGCGAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATAAATCCTATCTATAAAAACAACATGATTAATCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAAATAACATTCCACACGAAAAACGGCCTACAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : A # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 631-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960249.1 Peptoniphilus sp. DNF00840 Scaffold276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 630 33 93.9 34 NN............................... GGAAATTCTATGACACGTTGGGCGAGTATGGAGT 563 33 100.0 37 ................................. CCTTGATTTATTACTTTCAATTCTTTGTATCGGGCGA 493 33 100.0 33 ................................. TAAATCCTATCTATAAAAACAACATGATTAATC 427 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 98.5 35 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : GAAATTAGCTTGTGTTTCTCTGATTCCGTTTTTAAGATAAGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAATAATAACTTTGCCTGTTCGTCACTTAAACTTGCCCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATCATTGCTTAAAAAAGATATAAGCCATACTTTTAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTCCGACTCTCAAGCCGCTAAAATACATAAGCCTAAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAATAACATTCCACACGAAAAACGGCCTACAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCGCGGGTGCGTGGATTGAAATACTTGAAGACTTATACGAATATTGCAGGTTATATGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTTTATCAATAATAACTAACATATTTCCTCCTTAAACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAGATTAAGATTAATTGATTTCCATCAATCATATTTGTCGCACCCCTCGCGGGTGCGTGGATTGAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 894-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960249.1 Peptoniphilus sp. DNF00840 Scaffold276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 893 33 97.0 33 ................................C ATTGCTTAAAAAAGATATAAGCCATACTTTTAG 827 33 100.0 35 ................................. CCGACTCTCAAGCCGCTAAAATACATAAGCCTAAG 759 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 97.0 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Left flank : TATATCTTTCTCAGGATAAATTATAAAAAAATCTTTCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATCCTCTATATTCAACTAAGACTACATCAGGGCTTTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATCTCCTATGCTCTACGATGCTAAATAACTTTTAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTGATCAGATGCACTCTTAGGTTTGTAACCAAATTCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTAGCTTGTGTTTCTCTGATTCCGTTTTTAAGATAAGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAATAATAACTTTGCCTGTTCGTCACTTAAACTTGCCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAGGAAATTCTATGACACGTTGGGCGAGTATGGAGTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATACCTTGATTTATTACTTTCAATTCTTTGTATCGGGCGAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATAAATCCTATCTATAAAAACAACATGATTAATCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAAATAACATTCCACACGAAAAACGGCCTACAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1692-1058 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960249.1 Peptoniphilus sp. DNF00840 Scaffold276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1691 33 97.0 33 ................................A GGATAAAACCATAAGCAGAATTATTTGTAACTC 1625 33 97.0 34 ................................A AACCAGCTTGATTAACTAAACTCCCTAATTTATG 1558 33 97.0 34 ................................A TTTATATAATCACAAACAAGTTCTGCGAGTTCTT 1491 33 100.0 33 ................................. TCATTAATTGCTTTTAATTGGGCCTCTATTGAT 1425 33 100.0 36 ................................. ATATCTTTCTCAGGATAAATTATAAAAAAATCTTTC 1356 33 97.0 33 ................................C CTCTATATTCAACTAAGACTACATCAGGGCTTT 1290 33 97.0 33 ................................A TCTCCTATGCTCTACGATGCTAAATAACTTTTA 1224 33 100.0 34 ................................. GATCAGATGCACTCTTAGGTTTGTAACCAAATTC 1157 33 100.0 34 ................................. AGCTTGTGTTTCTCTGATTCCGTTTTTAAGATAA 1090 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 97.6 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Left flank : TAAAAAGCCTAGACCTAACTCATAAAAAACAAGGAAAAAAGAGACAAAACTCTTAAAAAAATGATTAGCTGTATTTTTTAGTAGGAGATAATGGCTAAAAAATACAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATACAAGAGATTAATTGACTATTACACATTTAACAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAGGATAAAACCATAAGCAGAATTATTTGTAACTCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAGATTTAGAAGAAGTAACTCCAGATGCAAGAGATGTCGCACCCCTCGCGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGTGCGTGGATTGAAATAGTAAACACTGGACTTTCCAAAGGAAAAGATGAGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAATAATAACTTTGCCTGTTCGTCACTTAAACTTGCCCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATCATTGCTTAAAAAAGATATAAGCCATACTTTTAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTCCGACTCTCAAGCCGCTAAAATACATAAGCCTAAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATAGGAAATTCTATGACACGTTGGGCGAGTATGGAGTGTCGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2086-1921 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960249.1 Peptoniphilus sp. DNF00840 Scaffold276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2085 33 100.0 33 ................................. CAAGAGATTAATTGACTATTACACATTTAACAG 2019 33 100.0 33 ................................. GGATAAAACCATAAGCAGAATTATTTGTAACTC 1953 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 100.0 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : TACAAGCCCTCTTATTAAATTCTTATCTTAGAGGAGACATAGAGGCCTATCCACCCTTTATGATAGGAGGCTAAAATGCAAGTGTTAATTACTTACGATGTAGAAACAGTAACGCCAGCTGGCAAAAAAAGATTAAGACAGGTAGCAAAAGTCTGTCTTGATTATGGACAAAGAGTACAGAACTCAGTCTTTGAACTAAATATTTATCCAGCCGACTTGGTAGAAATAAAAAACAAATTAGAAAAAATAATTGATTCCAAAAAAGATTCTATAAGAATTTATAATTTAGGGAAAAATTGGGAGAGAAGAGTTGAAAGTCTGGGAAGAGACGATACTTATAACCCAGAAAAAGATCTATTGATCTTGTAGGACTCGTGAGATTTGGACCTGGACATAAAAAGCCTAGACCTAACTCATAAAAAACAAGGAAAAAAGAGACAAAACTCTTAAAAAAATGATTAGCTGTATTTTTTAGTAGGAGATAATGGCTAAAAAATACA # Right flank : GATTTAGAAGAAGTAACTCCAGATGCAAGAGATGTCGCACCCCTCGCGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGTGCGTGGATTGAAATAGTAAACACTGGACTTTCCAAAGGAAAAGATGAGGCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAGGATAAAACCATAAGCAGAATTATTTGTAACTCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAAACCAGCTTGATTAACTAAACTCCCTAATTTATGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATTTATATAATCACAAACAAGTTCTGCGAGTTCTTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTTCATTAATTGCTTTTAATTGGGCCTCTATTGATGTCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 623-463 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960247.1 Peptoniphilus sp. DNF00840 Scaffold244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================= ================== 622 34 100.0 29 .................................. AAGTTGTACTGTTCTAACAACCAACTAAC 559 34 97.1 29 ...................G.............. TATTTTGAATGTCATGGCAACGAACTAAC 496 34 94.1 0 ...........................C...G.. | ========== ====== ====== ====== ================================== ============================= ================== 3 34 97.1 30 AAGCTTGGACCTAAGTGGATATACTGCTCTTAAG # Left flank : TGGACGTAAGTGGAGATACTGCTCTTGAGAAGTTGAAATGTAGTAACGACCAACTAACAAGCTTGGACGTAAGTGGAGATACTGCTCTTAAGGATTTGGAATGTGATAACAACCAACTAACAAACTTGGACGTAAGTGATAACCCAGCTCTTGAGTATTTGAACTGTGATTGGAACCAACTAACAAATTTAGATCTAAGTAAAAACATAGCTCTTACAAAATTGGAATGTCCTAACAACCAACTAACAAGCTTGGACGTAAGTGGACATATTGCTCTTAAGAATTTGAATTGTTATAACAACCAACTGACAAGCTTGGACGTAAGTGGAGATACTGTTCTTAATGAATTGCAATGTTTTAACAACCAACTAACAAGCTTGGACCTAAGTGGATATACTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTTTTGTACTGTCAGAAAAATCCGTTGACATATGTAAAATTACCTGACAGAGATTTTTATAAAGAATCATCTCCAATAACTTACACTGTAAAAGTTGCAGAAGGAAGTTCAAAAATTCCCTTTACTGCACTTCCACAAGGTTTTGACAGTTCCAGGATTCAGCCGGGCACACTTACCGGAGTGAAACTGGAAAAAGATGGATTTACTTGGGATAAGTCAACGAACCCTATAAAATTTAAGTATAAATTGTGGGACAAGCCAGAGAAAAATGATGCAAAATTAAGAGAAGCAGATGATGAAGAATCAGGATTTGTAGATGCGGAACTAAGCGTAGCAATACTTGAAGTAGTGGGACCAGTAGACCCAAATAAAGTACCAAATCCAAATCCAGACAAATATTGGACAGTAAAATTTGAATCAGAAGATACAAGCAAGGGAACAGTAGCAGCAGAAAACACCTTC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGCTTGGACCTAAGTGGATATACTGCTCTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 21770-20943 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960253.1 Peptoniphilus sp. DNF00840 Scaffold320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================================================================================================================================================================================================================== ================== 21769 33 100.0 33 ................................. ACAAGTCGATAAAACTATGGACTTTGACATAAT 21703 33 97.0 35 ................................C AAAGTTAAAGTAGTTAGAATTAAACATATTGTAAC 21635 33 100.0 33 ................................. TAGCCTAAGCCGCCCTTGTCTAACTCTACAAAG 21569 33 100.0 33 ................................. ATCTTGAAATAACGCCTAATACGCCAAGCACTC 21503 33 100.0 33 ................................. TCGAGCCAACAATCCAAAATAGATATATGGAAG 21437 33 97.0 33 ................................T GCTATTTCAATTTTTAGTTCTGCAATAGACTGA 21371 33 93.9 34 .....................A..........G TCGTAAGTGTACATATCGATGCCAAGAGATGGAA 21304 33 97.0 34 ................................T TGTTATGATAGTTTGAATAATGTTTCTTTAACTT 21237 33 97.0 229 ................................T TTAATATAATAAGGTGATTTACTATATGAAAAATAATTTTTTAAATTTATTTACTTTAATAACTTATCTTATAGGTTTTGTTTTAATTATATTGTCTAATATATATAAAAACATATATTTAGCGAAAGTAGCTATGGGGTTTTATGTTTTATTTGGTTTGATTTTAATTTTTGCCTTTTGGTTAAAAAAATAATATATTCTTCAAATGAATAAATATAAAAACGATTCA 20975 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================================================================================================================================================================================================================== ================== 10 33 97.9 55 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : GAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATGTAAGACGAGAAGTAAGAACACTAGATTAATAATAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTATTGAGGATTTGCAAAAAAAAGAGTTACCAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTTGTGATTGTCTTAATCTTGATAAATTTCTTATAAGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATTTTTCCGCTCTTGCATATATAAGATATAGACCTAC # Right flank : ATTAAGAAAGGTAAGGTTAGCAAAAGTTGGGAAAAAATTTAAAAGAAAAGCTGTTATTTTTAAAAGCAAATTGTAACCCTTATGAAATTAATGAGTATTTTGCTATTGAATTTGCAGATGATTATGATGTATTTGCCCAAGATAAAAATAATATTGAAGTCTTAGACTATCTAAATGATGAATTTATTGACATTGATGTTGATTATAGTCATAGTAGTGAATTTGATAGTAAAGTAAGAGGGACAATTGATGAAGCTATTAATATGTTAAGTTGTATGCCTTCCGAGTTGGTGGGTTGAAAATTTTTACTCGCCCAGCGAGTGAAAAATTTAGTAGCAATATTCATAGGTGTGTGGATAGAAATTGAGGTAAATGGTTATTATTATGAAGGTAAAATTTATTGGTGAGTCTGATCCTGTTTATATGATTAATGGAAAGGTCTACGATGTTATTAGCATTGAAAAGGGTTGGTACAGGATTGTTGATGAAGAAGGGGAGGA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-2.25, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22165-21932 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960253.1 Peptoniphilus sp. DNF00840 Scaffold320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 22164 33 90.9 34 NN..............................G TAAGACGAGAAGTAAGAACACTAGATTAATAATA 22097 33 100.0 33 ................................. ATTGAGGATTTGCAAAAAAAAGAGTTACCAAAA 22031 33 100.0 34 ................................. TGTGATTGTCTTAATCTTGATAAATTTCTTATAA 21964 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 95.4 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Left flank : TCTCCAGTCTGTACTCTCTTAATGAGTCTAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGTAGCCAAATTCAAAGCCTTGCACTAAGACATAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGCTACAAATATGAGAAATTATATAGAAAAACTTACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTCAGTTCGAGGATGAGTGGATTGAGGAATTGTATCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGGTAAAAAATCCAGACTTGAGATGGATTGATGAACAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGCAAGCGGCTACGCCGTCCTTGACAGTGGGGCCCTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATTTTTCCGCTCTTGCATATATAAGATATAGACCTACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAACAAGTCGATAAAACTATGGACTTTGACATAATGTCGCACCCCTCGCGGGTGCGTGGATTGAAATCAAAGTTAAAGTAGTTAGAATTAAACATATTGTAACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATAGCCTAAGCCGCCCTTGTCTAACTCTACAAAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAATCTTGAAATAACGCCTAATACGCCAAGCACTCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATCGAGCCAACAATCCAAAATAGATATATGGAAGGTCGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 22632-22264 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960253.1 Peptoniphilus sp. DNF00840 Scaffold320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 22631 33 100.0 33 ................................. TAGCCAAATTCAAAGCCTTGCACTAAGACATAG 22565 33 100.0 34 ................................. CTACAAATATGAGAAATTATATAGAAAAACTTAC 22498 33 97.0 34 ................................T CAGTTCGAGGATGAGTGGATTGAGGAATTGTATC 22431 33 100.0 35 ................................. GTAAAAAATCCAGACTTGAGATGGATTGATGAACA 22363 33 100.0 34 ................................. CAAGCGGCTACGCCGTCCTTGACAGTGGGGCCCT 22296 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 99.5 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATG # Left flank : ATCTATTACTTGATATATTAGAAATAACTCGACACGCAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTATGCTCGATAAAGTCGATTCTGATTCGATTTTTGTCGCACCCCTCGCGGGTGCGTGGATTGAAATAAGGCAACACCAGGACAATTAGGCACTGTTAAAACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGCATCTGCATCGCAAAGTGCCAAGGCTCTAAATAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATATTAATAGAATCTACAAGTGAAAGAATAAAACAACGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCGCGGGTGCGTGGATTGAAATCTCTCCAGTCTGTACTCTCTTAATGAGTCTAAAA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATGTAAGACGAGAAGTAAGAACACTAGATTAATAATAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTATTGAGGATTTGCAAAAAAAAGAGTTACCAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTTGTGATTGTCTTAATCTTGATAAATTTCTTATAAGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGTGCGTGGATTGAAATTTTTCCGCTCTTGCATATATAAGATATAGACCTACGTCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 23161-22861 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960253.1 Peptoniphilus sp. DNF00840 Scaffold320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 23160 32 93.9 36 -...............................C TATTACTTGATATATTAGAAATAACTCGACACGCAG 23092 33 97.0 33 ................................T ATGCTCGATAAAGTCGATTCTGATTCGATTTTT 23026 33 100.0 34 ................................. AGGCAACACCAGGACAATTAGGCACTGTTAAAAC 22959 33 97.0 33 ................................G CATCTGCATCGCAAAGTGCCAAGGCTCTAAATA 22893 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 97.6 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Left flank : | # Right flank : TTAATAGAATCTACAAGTGAAAGAATAAAACAACGTCGCACCCCTCGCGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCGCGGGTGCGTGGATTGAAATCTCTCCAGTCTGTACTCTCTTAATGAGTCTAAAAGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGTAGCCAAATTCAAAGCCTTGCACTAAGACATAGGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGCTACAAATATGAGAAATTATATAGAAAAACTTACGTCGCACCCCTCGCGGGTGCGTGGATTGAAATTCAGTTCGAGGATGAGTGGATTGAGGAATTGTATCGTCGCACCCCTCGCGGGTGCGTGGATTGAAATGGTAAAAAATCCAGACTTGAGATGGATTGATGAACAGTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //