Array 1 28378-26888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVI010000005.1 Klebsiella pneumoniae strain k2 NODE_5_length_209315_cov_21.896227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28377 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 28316 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 28255 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 28194 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 28133 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 28072 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 28011 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 27950 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 27889 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 27828 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 27767 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 27706 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 27645 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 27584 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 27523 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 27462 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 27401 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 27340 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 27279 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 27218 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 27157 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 27096 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 27035 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 26974 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 26916 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5956-6958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVI010000059.1 Klebsiella pneumoniae strain k2 NODE_59_length_7436_cov_32.412095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5956 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 6017 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 6078 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 6139 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6200 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 6261 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6322 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 6383 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6444 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6505 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6566 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6627 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6688 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 6748 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 6809 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 6870 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 6931 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //