Array 1 2441-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000019.1 Glycomyces sp. A-F 0318 19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2440 28 79.3 30 ....TT........AC-.........T.. GGCGTACCCCAGCGGGGCTCGCGACAGTGG 2382 28 89.7 32 T......T...............-..... TGCTCATGGCCCTCGACCAGCCCGCCCTGTTC 2322 29 100.0 32 ............................. GACCCACGTGGGGCACCTGCTCACCAAGCTGG 2261 29 96.6 32 G............................ CCCGCGGCGTTATCTTCGCGCTGGAGAAGCGC 2200 29 100.0 32 ............................. AACGACATGACCATCTACAACGTCCACCTCGT 2139 29 100.0 32 ............................. AACGACATGACCATCTACAACGTCCACCTCGT 2078 29 100.0 32 ............................. GACGAGCCTGAGGGGGTCGTGAATCCGGCTGC 2017 29 100.0 32 ............................. CCCGCGGCGTTATCTTCGCGCTGGAGAAGCGC 1956 29 100.0 32 ............................. TCCTTCAGCTCCTCGCAGAGGTCGATCCAGTC 1895 29 100.0 32 ............................. TCGGCGGTGATGACCTCGAGGTAGGAGGCCGT 1834 29 100.0 32 ............................. GGCGCGTCCGCGTCGAAGTCGGACGAGATGAC 1773 29 100.0 32 ............................. GGCTCGAACGGCGAGATGCCGAGGCGGTCTTC 1712 29 100.0 32 ............................. GGCTCGAACGGCGAGATGCCGAGGCGGTCTTC 1651 29 100.0 32 ............................. ACCGACGACACCTCGAAGTTCGCCACCGGCGG 1590 29 100.0 32 ............................. TTCGTTGCCGACCACCAGGAGGAGAACTTGCG 1529 29 96.6 32 ..T.......................... CGGCTCGGTGTGGTTATCGGTCACGGGGATGC 1468 29 100.0 32 ............................. TTCTGCGCGGCGATGGCGGTGTCGATGGTCTG 1407 29 100.0 32 ............................. ACCACGGGCCGCCCGTCTCGGATCACGATCAC 1346 29 100.0 32 ............................. ACCTGGACCTACCTGCCGGGGCAGGTCACCCG 1285 29 100.0 32 ............................. GGCGAGCACGGCGAAGCCGAAGGGCGCAGCGG 1224 29 100.0 32 ............................. CCCGGTGGCCATGCGCTGCGAGGCGGGACCGG 1163 29 100.0 32 ............................. GCCGAGGTCCAGAACAGCCTGTACCGGAGCCT 1102 29 100.0 32 ............................. GATCCACTCGTGGAGGTCGGCGGTGGTGGTGG 1041 29 100.0 32 ............................. TCCCCGTCACTCTCGGCGCGGTCGGACAGCAT 980 29 100.0 32 ............................. GGCGTGAGCCTCCAGGACGCCTTCCCCGACGC 919 29 100.0 33 ............................. GGAAGCAGCGTGACACAGCAGGAGAAGAAGGAC 857 29 100.0 32 ............................. CAGGCCGCCGCGCACATCGAATGGGCCGACCA 796 29 100.0 32 ............................. GGCGATCGGGGCGGCCAGGGCTGGGGCCGCGG 735 29 100.0 32 ............................. TGATCATCGAGGGACCCTCGGGCCCGGTGCGG 674 29 100.0 32 ............................. GTCGACCCGGTGGTCGACGTTGTAGCCCACGG 613 29 100.0 32 ............................. CCGGCCCCGTGCGCGTTCTCGCACATCGCCGT 552 29 100.0 33 ............................. CCCCGGCCGTGAGGGCGGTCAGGTGACGATCGG 490 29 100.0 32 ............................. GGCCCGCGCCGGCCACTTTCTGACCGTTCTGG 429 29 100.0 32 ............................. GAAATCCCTGAAGGAGAAATCGTCGTGAAGGA 368 29 100.0 32 ............................. TCGGCACGGGCGGCCTCCAGCTCGTCCAGCAG 307 29 100.0 32 ............................. CCGCACTCGATGCAGCGCTCGAAGAGGAACCG 246 29 100.0 32 ............................. ACCTGGCACGTCACGCACGACGGGGAGTCGAA 185 29 100.0 32 ............................. CCTGCCAGACGAGCCGGAACCCCGCAAGGGAC 124 29 100.0 32 ............................. CGTACGCTGTTACGTGCCATCGGAAGCCCAAT 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.1 32 CGGTCCACCCCCGCGTAGGCGGGGAACCC # Left flank : AGCGACCCGGTGTCGCCCTTCCCGATCACCGGTGAACGCTGGTGGGGCAGCTGCATGATCGACACGGCTGCGGAGTTCGACGAGGAAGCCGCACGGCTCGGCATTGACCCGGCCGGCGACATCGCGGTCGTCACCTTCGAACTCCGCAAATTCCTTTCCACTGAGGGGTACTACCGCGCCCACATTGACCTTTACGGCGCCGTCGTCGACGATCTCAATGCGACACCCGATCTGACCGGGCTGCTCGTGATCGGCGACGTTGATGTGGTGATCGAACGGCCCCCCGGCGGCTCGACTCTGCTTGACACCAGTCTCGCCGACCCCACTGACGGCAACCATGACCACCACCTCGACCCGGTCCTTGCCCGTGGCACCGTCACCGATCTGGTGAACCTGAGTTAAAGCACCCGGGGCGAACCCGGTCAACGGTAGGCGACCGGATCGCAATGCCATCGCAGCGGGGAATCCCAGGCTCAGGCCGAGTTGAGTCGGTTCGGGTA # Right flank : CAGCTTGGCTTGCTTCTTGTCCCATACCGGCGTCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCCACCCCCGCGTAGGCGGGGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 289660-288289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000002.1 Glycomyces sp. A-F 0318 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289659 29 100.0 32 ............................. TCCATTGCGGACCCGTGGAGGGAGTCGAGCAC 289598 29 100.0 32 ............................. CATTCGCCGTTGCCGGCCCGCTGGGTCCAGGC 289537 29 100.0 32 ............................. CGAACCACTCGACCGGCTGGCGGACGATGCGG 289476 29 96.6 32 ............................G CACTCAACAACCTCCGCGACGCGGTCGCCCAG 289415 29 96.6 32 ............................G ACGTTGCCGCCGGAGGTGCGTCGGTTGCCGCG 289354 29 96.6 32 ............................A CGACCACCCGGCAGGGCTCCCTCCGAGCGACT 289293 29 100.0 32 ............................. TCGTTGACCGTGTAGGGAGTGCCGTGGTGCAG 289232 29 96.6 32 ............................T TGAGGGCGATACCCTTTTGGGGCGGTTGTGGT 289171 29 96.6 32 ............................G ATGCCCGCCCGCGAAGCACTCGAGCTCGGGCG 289110 29 96.6 32 ............................G CACGTCCGGGAGCACGCCCGCACGTAGTCGTT 289049 29 96.6 32 ............................T GGCACCGCATCTGGAACGAGGAGGAGAACCAT 288988 29 96.6 32 ............................G CACGTCCGGGAGCACGCCCGCACGTAGTCGTT 288927 29 100.0 32 ............................. CGCTCGCGCTGGTCGTCGGTCATCTCCTCGGC 288866 29 100.0 32 ............................. TCGCGCCCCGCGCAGCAGAGACCCGACACCGC 288805 29 100.0 32 ............................. GCGGCGAGGACCCGGTGGCTCCGGCTCCAGAG 288744 29 100.0 32 ............................. GTGTCGGGGTCCCAGGCGACGATCTTCCCGAA 288683 29 100.0 32 ............................. TTGACCTCGAACGCCCGCTCGACGCCCTCGCC 288622 29 93.1 32 ..G..........T............... AAGCTCACCGCCGACATGCTCATGAAGCTCAA 288561 29 89.7 32 ..G.........T..............T. CGGACCCAGGCGAGGACGCACAGTGCGACGCC 288500 29 79.3 32 ..G.....T...TT...........G..G ATGAGCGGGTGCGGATGGATGGCGGTCATCGA 288439 29 79.3 32 ..G..........TG......G...G..T CGGTCCTGCGTGGGGATCAGTGCTTCGATGTT 288378 29 89.7 32 ............T............G..G GTGAAGGCCTCGGCTAGGCGGCCGGCCTTGGT 288317 29 82.8 0 ..G.....T..G............T...G | ========== ====== ====== ====== ============================= ================================ ================== 23 29 95.1 32 GAAAGCCCCGCACCCGCGGGGATGAACCC # Left flank : AAGAATATGCGTTCAAGCTGACCGCGAGCCCGACCTACAGCGAGCCGCACCCGGCGGGGCCGACTTCGGAATCGGGGGGCGCCGAGGAAAAACGGCCCAGGGGCACTCGCCGACCGATCAAGAGCCGAAGCGAGCAGCTGAACTGGCTGCTCAGGCGGGCTCCGGGCGCAGGCTTCCGGGTTGCCGAGATCGAGCTGCCCAGCGGCTTCCTGGATGAGGAGCCGCAAGCGGTCCCTGATGTGTTGTTGTCGGACACGGAGGTGAAGAGCTTCAAGAAGGGGGATTCGGTCAAGCCCGGCGCCAAGTCGATGGTGACGATTCGGAAGGTGACCTACACGGGCAGGCTGGTGGTGGAGGACGAGAAGTCCATAAGACGTGCCTTGATCCACGGCTTGGGCTCCGCGAAGGCCTACGGAGCGGGGCTCCTGACACTCGCCAGTCTCAAGTGGATAGAAAAAGAGAATAGGGTTTCGAGGTGACAGACATGCAGGTCAAGAAGT # Right flank : CCCGCGTAGGTGTTGACGATGGAGCGGTCATGTTCGGCCCCGCAGGGGCGGGGGCTTGCAGCGGTTGGCTCGCGTTGATAGCGTCTGCCAGCGTGACTTCTCCGCTTCGCACGTTCGGACCGCTGGAACAGAGCTACACCGGTTGGGCCTCGGCCGCGCTCCAGATCGGGCGGCCCGCCGCCGATCTGGCCGCCCAGGGGCCCGACGCCATGCCGGTCACCATGTCGAACCACTCCCATACCGAGGACTGGTTCGAGCTGCTCACCCGTCCCCTGTGGGGCCTCGCCGCCGCCAAGGACGCCGTCCCCGACGAGGTGTGGGCGTCCCTCGCCGCGTCCCTCGCCCGCGCCCTCGACCCCGACGACCCCTGGTACGTCGGCGACCCCGCCGGCGGCGGCCAGCGCATGGTCGAGGCCGCCTCGGTCGGCCAGGCCCTCGCCCTCGCCCCGGAGAAGCTCTGGGAGCCCTTGGGCCCCAAGGCGAAGGACAAGACCGCCGCC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCACCCGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7996-9366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000042.1 Glycomyces sp. A-F 0318 42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7996 29 100.0 32 ............................. TGGATCGCACACCGCGAATGGGGACCGGAGTG 8057 29 100.0 32 ............................. CACCCGTGACGCACAACCTCGCTGGCGCGCGA 8118 29 100.0 32 ............................. TCGATGGACTCGCGGGAGATGGCGCCGCCGAA 8179 29 100.0 32 ............................. CGTCGGAGCACTGGCACCCGCTGGTGACGCAG 8240 29 100.0 32 ............................. GTCGGCGTTGTCCGCGGCCCGGTACTGGACCT 8301 29 100.0 32 ............................. TCGTGCGGGTTCGGGCCGGTGTAGACCTCGGG 8362 29 100.0 32 ............................. GTGTCGCCGGTCATCGCCCCGCCGATCGGGAT 8423 29 100.0 32 ............................. CTGCTCGTCGGGGCTCCGGTGCTCGGGGTGGC 8484 29 100.0 32 ............................. GTGTCGCCGGTCATCGCCCCGCCGATCGGGAT 8545 29 100.0 32 ............................. CTGCTCGTCGGGGCTCCGGTGCTCGGGGTGGC 8606 29 100.0 32 ............................. ACCAGGTCTCGGATTCGCCACTTGCTACCGTG 8667 29 100.0 32 ............................. CGGCGCACCTCGGACGGACGAGAGGTTCCCAC 8728 29 100.0 32 ............................. TTGCGGAAGCGCTGCGGTCCCGCAGCAGGTTG 8789 29 100.0 32 ............................. CTCGAAGCCCAGCAGGACCTCCCGCTCCCGCA 8850 29 100.0 32 ............................. TCGATCAAGGTCACAAGCGACGTGTACGGCGG 8911 29 100.0 32 ............................. GCGGTGGCAGAAGGAGGTCGCCTTGGCCTACT 8972 29 96.6 32 G............................ AACACCCGCTGGGACGACCTGCTGCCCACGAT 9033 29 100.0 32 ............................. GTACCGCTCGATGACCTCCAGGGCGGGCAGGG 9094 29 100.0 32 ............................. GTCGTAGCGTAGGTCCATGACTGGCCGAATCC 9155 29 96.6 32 T............................ GTGGAGCTTCTGGGCGCCGTCGATCGCCTGCC 9216 29 100.0 32 ............................. CGACGAGGAGGACCGGTGAGCACTAGCCCGTA 9277 29 100.0 32 ............................. CCGATGAGGAACGCGATCAGGGACGCGATCGT 9338 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 CGGTCCACCCCCGCGTAGGCGGGGAACCC # Left flank : CGGCGGGGCGCTCCCGAAGAAGCCCAGAAGGGAGCTGGCGGCCATTGTCCGTCCCTCGGCAGGGGCGGCGGGGCCGTCATCCTGCCGCCTGCGTCGCACGGACCGATCCAGGCTGCTCACCCGTTGAACAAGTCCGTAAGTTCGTCAAGGTCATCCGAGAGGTCGTCGACCTTGGCACGGTATTCCTCCTCGGTCAGCTGCTCCTCGCCGGAGTCCTCGTGACGCTGGCAGACCAGCATGGTCTCGACCGAGTCGGCCGCGTAGCCCGCGTCCTCCTGCCATTCGATGCACGACTGTTGCTTCGGTGGGGAAAGAACCACGACGAGCGCCACTATGCCGGCCAGAAGCACGACTGCACCGGCAATACTCATGAGAGGCTTGCGTTTCACCAGATCACGCTACCGCAGTCGTCGAGGAAGGCACGAGAGCGTCACGCTTCGCCGTCATCTCCGCGTGGCGGGTAATCCCCTGCGAGACATGCGGGCCGCGCAAGCGTCCTC # Right flank : CTCTTCTTGACCTGCAGCTTCAGTGAGTCGTTGCGGTTTTGTGATCAAAATTCAACGGGCCACTCGCTCTCATAGGGGACCGTGTCGGCCATGGTGTCGGTTGGCGGTGCGGTGAAACGCATCAGGGTGAGCCCGTCGAAGTCTTCAGGTTGTCGCCGTCGAGTACCTGCGGTCCTAATGGTGAACCCTTGCTCGTTCGGAGCCGGGTGAATAAGCACCGCTGCCCCATCGGCAACGGTCTGTTCGGTCAGCTCCCATAGCTGTTGCCGCACCCGTGCGGAAACGGTCCCGACGAATATGCCAGGGGCGACCTCGATGGTCCATCGACTCAAGGCGCCTTTCAAGTGCGGAGGGACAGCGGTGGTGGTGAGGACCATCATGGAGGGCATGTCAAGCTGCTTCGTCTTCGTCGCCGTAGTTGACCCCTGCGGGGACTGCTCCGGTCTTGGGGTCCCAAAGATGGACCAGGCGGGTGGGCTTGCGTTCGTCGAACGTGCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCCACCCCCGCGTAGGCGGGGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 20561-18703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000042.1 Glycomyces sp. A-F 0318 42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20560 27 93.1 32 --........................... GAATTCCCGTCTCATGGTGCTTATCGAGGAGA 20501 29 100.0 32 ............................. GCCGTCGCGCTGTTTGACCAGCGCGGCATATC 20440 29 100.0 32 ............................. GTGCGCCCGGAGCTCCCCGGTGCAGTCCTCGG 20379 29 100.0 32 ............................. TGCCCTGTGACCTCCGTGGAACTCGTTGTCGC 20318 29 100.0 32 ............................. TTGACCCAGTCGACCAAGTCGCCGAGCTTGTT 20257 29 100.0 32 ............................. GCGAGGTTCACGCCCTTGACGGCGGCCTCGGC 20196 29 100.0 32 ............................. TCCTCGACGGGATGGACCGTGTGCCCTCGGTA 20135 29 100.0 32 ............................. TCCTACTCGGGTTCGAACCCCCACGACAAGCA 20074 29 100.0 32 ............................. GCACCCACCGATCCCGACCAGATCGCGCCCGG 20013 29 100.0 32 ............................. GGTCTGTTCGCTCTGGCGGTGTTGGTGGATGA 19952 29 100.0 32 ............................. GTTATGCCCTTAGCCGCGCAATCTGGGCACGG 19891 29 100.0 32 ............................. GTCCGCCCGGGCAGGGTCTGGCCCGTATAGAC 19830 29 100.0 32 ............................. CTGAAGCAGATCGCCCGCGACGTCGAGAAGAG 19769 29 100.0 32 ............................. CGGGCCATGGCCTTCCAGTCGGTCTCCTCGGC 19708 29 100.0 32 ............................. AGGCGCGCGCCGCGGGCGTCGGCCTCGATGAT 19647 29 100.0 32 ............................. GGGCCCCGCCTCTCCGGCATCGTGACGGTGAC 19586 29 100.0 32 ............................. GGATTCGGGAGTGGGGTCGGCGGTGTAGCGGC 19525 29 100.0 32 ............................. CCAGGGGTCGAGCGGGACATACAGCCGGATGG 19464 29 100.0 32 ............................. GTCGTGGTCGAAGCGGTCCATGAGGGTGGTTC 19403 29 100.0 32 ............................. CGGCACCACGTTCCAGGTCCCGGGCCTGTGGC 19342 29 100.0 32 ............................. GACCACCTCAGCACCGTCGACCCGTTGACCAC 19281 29 100.0 32 ............................. GTGAAGCGGTTCGTCTCCAACGTCGTCCGGTA 19220 29 100.0 32 ............................. GTCCCCGCAGAGGCCGTGAACAGCAGCTCGTC 19159 29 100.0 32 ............................. CGTCCGTCCGTAGCCGCCGACAGCCCCGATGC 19098 29 100.0 32 ............................. CCGCCGCCGAAGCACTCCTCGCCATCGGAGTG 19037 29 100.0 32 ............................. AAGGGCCTCCAGTACGTGCTCCAGGACGCGGG 18976 29 100.0 32 ............................. ATGCCCTGACGGGGAGCGGTGGCCTGACGGGG 18915 29 100.0 33 ............................. CTGCTGGGTCTCTTGCTGGCGGGCGAGTTCGTC 18853 29 96.6 32 T............................ AACACCGACGGCATCAACCGGATCATCGTCGG 18792 29 100.0 32 ............................. GGAAACCCTCTCGACCCCCACCAGGGGCCTGC 18731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 CGGTCCACCCCCGCGTAGGCGGGGAACCC # Left flank : | # Right flank : TCTTACTGACCTGCGCTTATAACGAGCCTTTACCAATTTGAGACAAAAAACGGAGGATGGTTTCGCTCAGCAGTTCGGTCTGGCTAGAAGCCGGATGCGTTGCCATTTCTCCAAGATACGGCAACGAAGTGCGCCAACGGCTGGCATCGTCGCCATCGGCAGTAGGCAGAGCCCTAGCTGGGGTCGGTGTTCGATGGTTTCTCACACTGATAGTGGAAGTAGTTGTCGCACTGGTGGTTTAGGTTTCAAGAGACGAGGCGTAGCTGAGGAGTCGCATGGAACAGCACCTGGTGAACAAAGTGTCGTTGACGTTGTGGGGCAAGTCGAAAGGGCTTGCCGAGCCCTATAGCCTAATCCGTCATCTGTTGGACACGGCGGCCATGCTTGAGGTGTTGTGGGATCACTATCTTGACGGTAACCAGCGGCGCGTGGTCGCTCGTGGTCTCGGCAGCGCGGCCGACCTGGCACAGGCACGCGCGACCGTGGTGTTCTGGGGTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCCACCCCCGCGTAGGCGGGGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 45958-43848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000006.1 Glycomyces sp. A-F 0318 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 45957 29 100.0 32 ............................. AAATTTTCACGCGCATGTCACCTGCTGATGCA 45896 29 100.0 32 ............................. CTCCGGGGCCTCGTGAACGACCTCGCCCGCGC 45835 29 96.6 32 ............................C GGTCCGCTTCCAGGCGACCGGCATCCGCCACC 45774 29 100.0 32 ............................. CAGCTCAACGACATCGGATAGGCCTGTGGCCG 45713 29 100.0 32 ............................. CGGCCCATCGCTGACCCGTGGTCGCTGTCGAC 45652 29 100.0 32 ............................. ACGTACGCGATGACGCCCCCGTCTCGGTTGCC 45591 29 100.0 32 ............................. ATCATCTTTCGGCGGCGGCGGCCTTGCGGTGT 45530 29 100.0 32 ............................. CGCCAGAAGCGCATCATCTCCGCGATGGACGA 45469 29 100.0 32 ............................. AAACGGAAGGGAGTCTGACAATGGGTACATTC 45408 29 100.0 32 ............................. ACGGTCGCCGCGTCCCACCGCATCAGCGTCCC 45347 29 100.0 32 ............................. CGGCGGGCCGACCGGATTTTCGACCCGGAGAA 45286 29 100.0 32 ............................. AAACAGGTGCCGCCGTTCCCCCCGTGCCGGAG 45225 29 100.0 32 ............................. CCGATGGACTGGGACGACATCGACACCGACTC 45164 29 100.0 32 ............................. ACCTCCGCCGAGATTTCCTTCGCGAGCGTGCC 45103 29 100.0 32 ............................. GGGCACGGTGCCTGGAACCCCGCCGGGCTCTA 45042 29 100.0 32 ............................. GCCCTCGACGCGATGAAGGCCGAACGCAACGG 44981 29 96.6 32 ............................A TGCGAAGCACATCAGATGAGTTTGCCGTGTTC 44920 29 100.0 32 ............................. GTGCCGTATTTCCACACGTCACCGGTGGTGGC 44859 29 100.0 32 ............................. CCAGGGGCTCATCGGACCGGCCTCCCCTCGGG 44798 29 100.0 32 ............................. ACACCTACGACCTCCCCGACCCCGCCAAGGCC 44737 29 100.0 32 ............................. GACACCGCGGTCACCATCTGGAACGGCATCAA 44676 29 100.0 32 ............................. TCCTGCCACGACTGGAACACGAGCGTGCATCA 44615 29 100.0 32 ............................. ACGATCCGCGGCGACGGCAAGGAAAGCGAACC 44554 29 96.6 32 ..........T.................. TTGAGGAGCTCGGCGGCGGGGATGAGCAGCGG 44493 29 100.0 32 ............................. CCGGTCGACGTCATGGCCGAGCTCGTGCGCAT 44432 29 100.0 32 ............................. GACAGCAGGTAGTCGTCGGGCACCTCGGGCGG 44371 29 100.0 32 ............................. CGCGGCCGCTGGAGCTGGTCGTGCGCCGCGAG 44310 29 96.6 32 ..........T.................. GCCTACGACCTCGCGCCCGACCCGCTCACCGC 44249 29 100.0 32 ............................. ATCTGGGCGTACAAAAACGAGCGGCTGACCAC 44188 29 100.0 32 ............................. AGGGTCCCGCGGTAGCGGGTGGGGATGGACGG 44127 29 96.6 32 ............................T ACGCCGATGGCGATAAATACCACGACAACTGC 44066 29 100.0 32 ............................. GGGTGGCGCGACTGGAAAAAAGAGGGGCCGGC 44005 29 100.0 32 ............................. GTGGATCCGGAGGCGGATGCGCACCTGTGGCC 43944 29 100.0 39 ............................. CTCGGCCGCGCCGGCGCCGAGGCCCTCCAGCAGATCAAC 43876 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ======================================= ================== 35 29 99.3 32 CTGCTCTCCACGGACGTGGAGGTGTTCCG # Left flank : GCGCCTTCCGCCTCCTTCCACAGATCATCAACGACCTCCAATGGCTCTTCGAGCCCAACAACCCCAGCCCGCCCGAGACCGTAAACCCAGAGCTGGTCCACCTGTGGGATCCCGACATCGGCGAAGTCGCCGCGGGCGTCAACCACGCCGACCACGAACCCGACTGGTGACGTATGGCCAACCTCGTCGTCATCTCCACCACCGCCGTCCCCGACCATGTCCGTGGTGCACTCACCCGCTGGATGATCGAACCCACCCCCGGCTTCTATGTCGGCACCCTCTCCGCCCGCGTCAGAGACGAACTCTGGCAAGCCGTCAGCGCCTCCGTCGCCGACGGCGCCGCCACCTGCGTCTACCCCCACGCCGACCACGAACAACGCTTCGTCATCCGCACCGCCGGCAGGCGCCGCCGCACCGTCATCGACCTCGACGGCCTCCAACTCATCCAGTTCCACGCCGAAAACGAACAACAGCCCGAGTAAACTCCCAGTTCAGCAAGC # Right flank : GCGGTTGGACAAGGCCGTCACTGGCCGGACGCCCTGTTCGCTAAGTGGTTCGTCTGGCAGGCGTGCAGCGGCCCTATAGCGGTCCGGGCCAAGAGCAATCCTTTCTTATTGGGTTGAAAATGCTGCTCAGGGCAGTCATTTGGAAATAATGCGCGTCCGCCTGAAAAGCGGAAGGTCGCCGTTGGAGATCTGCTCGGCTGTGGATGATCTGTGGATAAGTTAACGAAGAGGAGAGATAACCCGCAGGTCACGGCCCGTTTTTGAAACCATAGGTTGTGGGTTCGAGTCCCACTGGACCCACCACAAGCCCAGCTCAAAGAGCATGAGAAAACCGGGCAGGCCGTGAAGGCCCACCTGGTACAGCAGCTGCCCCAGCGCCTCGCCGAGCCGCCGCAGCGCCTCGCGCGTGGCCTCATCGGAGACCTTCGTGTACACCTCCATCGTGATGCCGAACTTCGAGTGCCGAAGCATCCGCATCGCGACCCTGGGGTGCACGTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGGACGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55130-56012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQZ010000006.1 Glycomyces sp. A-F 0318 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55130 29 100.0 32 ............................. TTGCGCAGCTGGCGTTCGAGCTCGGCGATGCG 55191 29 100.0 32 ............................. GCAAGAGAAAGGCCGGGGTGCCAGCCCCGGCC 55252 29 100.0 32 ............................. CTGGGCGGGCAGTCGATCAGGCAGATGTCCCA 55313 29 100.0 32 ............................. GCCCGTAATCCCGTAAATACGGGGCTGCGGGC 55374 29 100.0 32 ............................. TTCGGGTGCGACTCCGGCGGGGCGATCCACCG 55435 29 100.0 32 ............................. TTGACGCTCTCGGCGCGCCTGCGCGAGGCGGG 55496 29 96.6 32 ..............T.............. ATCGGCGCCCACGTCGCCGGCCACAACACCGC 55557 29 100.0 32 ............................. TTGAGTTCGTTGTCGAACGGGTTGAACTCCAG 55618 29 100.0 32 ............................. CATTCGTCGGCGCCGTCCAGATGCGACCGGGC 55679 29 100.0 32 ............................. ACCTTGGCATGTCCGAGATCCGTTTGCGTGAT 55740 29 100.0 32 ............................. ACGTAGTCGATGAGGTCGGCGTCGGTCTCTGC 55801 29 96.6 32 ............................A CTACGCCGAGAATCGTCCGCGTATTCAGCCAC 55862 29 96.6 32 .........G................... GGTAGGGTCTTCCGGGGCCGCCTCAGGGGCGT 55923 29 100.0 32 ............................. GACGGCCGGACGCGCACCATCCGCGCCGAGCA 55984 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 CTGCTCTCCACGGACGTGGAGGTGTTCCG # Left flank : AGGCCGGCCAGCAGCATCACGAACGCCCGCGACTCTCCCAGCGACAGACCGAGTTGTTCCGCCAGCCAGTCGCGCACCCGCACTGCCAGGTAGTCATCCCAGACCCGGCCAGCGAACGCGGCCGCATCCAACAGGTGACAGATCAACGGATAGGTCTGCGGTGGTTCGCTCGCCGAAGCAAGACCACGCGACTTTCCCCAGATCAGCAGATCAACTAGATTGGAACTCAAGAGCACCTCCGGAAGCGCAAGGGATATGCACGAACTCGGATCATCGCAGCACCCGGCAACAACCACACCCACCAGCCACGACCCGACCGCTCCGAGCCGTAGCTGCGAGGCACCTAAGCACTCAAACCGCGCCGCCTACGCACCCAACCCGCACCCACTTTCGAGTCCACACCTGCACGGCCACCCGTACTCACTCAAGCCCTCTCTGCACCGCCAAGCGCCCCGAAACGAACAAAGGGCCCTGTAAGATCCCAGCTCAGGAAGCCTGCT # Right flank : GCCCCGACAGCTGAACTGGAGGTTCTCATGATCGGTTTCATCGTCGCCGGGCTCGTCATCGGCGCGCTCGCCCGCCTCATCAAGCCCGGCAAGCAGAACCTCGGCATCATCGCCACGCTCCTGTTGGGCCTCGTCGGCTCGGTGATCGGCGGCATGGTCGCCAACCTGCTCGGCACCGGCGACATCTGGGAGCTGAACGTCCTCGGCTTCGTCGTCGCCGTCATCGCCTCGGTCCTGCTCATCGGCGTCGCCGAGGCCATCGCCTCACGAGGCCACCGCACCGCCCACTGATCCCTCATGCTTGGCTGGGCCCGCTCGCTGCGTGAGCGGGCCCAGCCGCTGTCCGCGGGACCGCGACATCTACCAGAGGCCGCCGCGAGGCGCGGGGCTGTCGCTTCGGGCAGTACCTGCGCCCCGAATAGGTGCGGGTGCGGTCCTCGAGCGGTTTACGGTGCAGTGACGGTGACCGTCGCATCGGGACAGTCAGCGATGATCGCCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGGACGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //