Array 1 340554-340849 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 340554 29 89.7 38 .....G.T...G................. CAAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAG 340621 29 89.7 37 .....G.T...G................. CCGCTAGTGACAACAAACTGTAGTGCATGACCAATAA 340687 29 100.0 38 ............................. CGCACGCACAAAAACTGCACAAAAACTGCTAAAAAATG 340754 29 100.0 38 ............................. CTATAGTGAATAACATCATTTTTACATTTTGCAATGAG 340821 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.9 38 GTTTTTTGTGTACCTATAGGGGATTGAAA # Left flank : GAGCTTAAAAGTATCTCTTCTTATATAACAGAAAAGTTAAAGGCTTTGGATTTGAAAGAAGATATACAAACGCTTATGCAGACCGAAGGCGATGTAAGGAAAACCTATTATCAGGCTTTTAACAGTATACTAAAAGATATGGAATTTGAAAAAAGAACCAAAAGACCACCGGAAGACCCTTTAAACGCCATGATATCTTTTGGCAATTCACTACTTTATACTACAGTGCTTAGTGAGATATATAAAACGCATTTGGACCCGCGCATAGGATACCTTCACGAAACAAACCAAAGAAGCTTCACTTTAAACCTTGATATTGCAGAAGTTTTTAAGCCGGTGATTGTGGACAGAGTAATTTTTCAGCTTTTAAATAAAAATCAAATAACTGAAAAGCATTTTGACAAAGATATAAGTTTTGCTTACCTAAACGAATCAGGGCGAGAGATATTTGTAAGAAGTTTTGAAGAAAAGCTAAATACAACAATAAAATACAAAAATAT # Right flank : AAGAGTTTTTGTTAGGTTATAGAATAATTGCTGAGATATATAAGAATGTCATGGTTTATGCGTTCACAATGTAGTGAATTTGTAAAATACATTGACAAAATGCATAAGTTGTCATATAATATACTATAATATGAAAATATAAATTAAGATATTTAAGGAGACTTGTCAATAATTTTGTGTCTCATAACAAAATCTCCTGTTGAATATTTGTAAAACTTCATATGAGGACCCTTTTAATGCAGGAACTGGCTTACTCCACTTATTGTTCTTTAAAATATCTCTCTGGACAAGGATATTTATTTCAAGAATCTCAGCAGATTGGAAATAGCCTCCTAAGTTTATCCTTGCTTTTTCAATCATGCTATTTATACTTTCTACGGGATTGGTAGTATAAATATGCTTTCTTAGATTTTCTGGATATTTCAAGAAGCATAAGTACCTTTCTTTGTTAGCTTTTATCCTTTTTATGAAGCTTGGATAAATAGACTTAAATCTCTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTGTGTACCTATAGGGGATTGAAA # Alternate repeat : GTTTTGTTTGTGCCTATAGGGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 346962-347123 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 346962 30 100.0 35 .............................. ACAACACCTTTGCCGTTTACAAGCACGTTTGAAGA 347027 30 100.0 37 .............................. TGATTTGACAGCATCAAATACAGTTGCAATAATCTGA 347094 30 93.3 0 ............................AA | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 36 GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Left flank : ACTTGTGAATCGTGGCATACTTGTCTTTATAGGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGCACTTCAATAGCTGAATAAGCGTAGAGAGTGTTGGTATGCTTGTGTTGAACCCCACGGCATTTTTAACTTTTTTAGTTAGGGTTTTTAGTAGGTTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAAAGCCGTAATTACATAAAACCGTAAAGCCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATTATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGGGGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTGGG # Right flank : AAGAAAACGTATTGTATAAGTTCAGATAGACTGAACATAGAGTGCCTGAGCATGTTTCAGATGCCTGTCTTCTTAAAAGACACTAATCTCATGATGTAAAAAATGCCCTTGGCACACTAGTGCGTGAGCATGTTTCAGATAAGCATGTTCTTAGAATACACTTATCACACGACAAGTATGCCACACAATAGTAAGAAATGCCTTTGGCACACTAGACTCTTGAAGAAGTACATAGAAAATACAACTTTGTAAGATCTACAAATCTACCACGGTTTATGTGTTCACGATGTAGTGAACTTATACACTATAGTATGCCAACGATACTCCTTACATCGTAAGTAAAAAGTTTGTTAAAAATATAAAAGCATTTAAAACATGCTTACAGCATTCTATTTATATCCTATCCAAACTCATTCACTTTGTAGGCTAATTTTACCTATATCAGAATATGCTATATCTCCGGCTATTACATAAGATTTATTTTGATATTTAAAAGCCAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 591419-592105 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 591419 28 100.0 38 ............................ TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG 591485 28 100.0 38 ............................ TATAAGTATGAAGCGTATGAATATATTATACCTGATAC 591551 28 100.0 39 ............................ TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA 591618 28 100.0 38 ............................ TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG 591684 28 100.0 38 ............................ GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG 591750 28 100.0 38 ............................ GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT 591816 28 100.0 37 ............................ GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC 591881 28 100.0 38 ............................ GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT 591947 28 100.0 38 ............................ GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT 592013 28 100.0 37 ............................ GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG 592078 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 11 28 100.0 38 GTTTCATCTGAACCGTGTGGGATATAAA # Left flank : TGTTATAATTTTTTTGTATGTATGTGTTCACGATGTAGTGAACTTGTACAACTTATACAATTCGGATTAAAATATGCTATAATATTTACATAGCCATTAGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATAAGTGTAGAGAGTTTTTACATACTTTTGATAACCCCACGGCATTTTTAACTTTTTTAATTAGGGGTTTTAGTGAATTGTTTATACAAAAATAAGTTTTATTATCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAATTACATAAAACCGTAAAACCGTAATTACGGCAAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACGAAACCATTGATACACTATATAATTTTAGGAGTAGTGATTTCTG # Right flank : ATTATATATACCTCCCAAACTTGCGTTTATATTTAAAATACTACAACACAATTAACTTGACAATGCTTTTTATAAGTTCAATATATCGTGAACACATAAACCTTGCTTATAAAACGTGGCATGCTCGTCATATGATAAGTATTTGTTAAAAAGATAGGTATCTGAAAAGTGGTAAACCACTCTGCATTCATAGTCTATCTGAACTTATACATACTGTTTGATTAGCTTTTATGGTTTTTATTATAGTCAAATAAATTATTCACGTTACTATTAGTAAAATGGGGGATCTATAAAATGAGGGTAAGAATAGTGCTTAAAACAGATGAAATGCCACTTTTATATAGGCATAGGATTATATCTTTAATTAAAGAGGCACTTATGAGGTCCGATAAGGATTATAAGGAATTTTTGTACGATGGTAAGATAACAAAACCCTTTACCTTTAGCTTGATGTTTCCTAGAACAAAAGAATTTGTAAATAAAAAGGTTATTATAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 929111-927965 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 929110 29 100.0 35 ............................. TTGGCATCTACAAATTTAAACTGTATCTTTGGAAG 929046 29 100.0 38 ............................. CCTCTATCAGGCTTGAAATCTTCATTTTTTAATATCGC 928979 29 100.0 36 ............................. TTTTACAATATTGACTCTAATCTATAAAAATGATAT 928914 29 100.0 42 ............................. CCATATCATAAAAAAATACTCTATTTCTTGATACAAATCATA 928843 29 100.0 36 ............................. TTAAATTAGGGAATGGTGTTTGAAATTCAAAACTTG 928778 29 100.0 37 ............................. TCCAGAGTTTATGCTTTGGTGTAGAGTGTATAAGTGT 928712 29 100.0 36 ............................. TCTTGTATATCAAATGCAAACAATCCTAATGATTCT 928647 29 100.0 37 ............................. GCTTGTTCTAAGAGTTTGAAAATCCTAATCCACAGCT 928581 29 100.0 37 ............................. ATCATGGACGCTGCGATTGAACTACTTGCTTACAACG 928515 29 100.0 35 ............................. CCTTTTAAGATTTTCTTCATTTTCTTTTCTCGCAA 928451 29 100.0 37 ............................. ATGGCTTGGCATATTAGACCCTGTCAAACTAAACACA 928385 29 100.0 34 ............................. ACACATTTTAGCGTCACAGACAATGATGGACTGA 928322 29 100.0 38 ............................. TACTTCTTTTACATTGTTAATGTTCCTTTCAACAAAGT 928255 29 100.0 37 ............................. AGTCAATCAAGCAGTGCAAGACTTTATAAATTGGACT 928189 29 100.0 37 ............................. CTATCTACTACGCTAAATCTTTAACGTGGGATGGACA 928123 29 100.0 36 ............................. CTTTACGAAAGATTGAAGCCAAAGAGAAAGAAATTT 928058 29 100.0 36 ............................. TTGCTTTAAATGTGTTGTGGAAGGTGTGTAATAATA 927993 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 99.8 37 GTTTCATCTGAACCGTGTGGGTTAAGAAG # Left flank : TGTCTTATAACATGTCTCTGTTAAAAAGACAGGCATATAAGACGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCCTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATATGTGTAGAGAGTTTTTACATACTTTTGATAACCCCCACGGCATTTTTAACTTTTTTAGTTAGGGGTTTTAGTGGATTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTAACAAGCGATTAATTTTGCCGTAAAACCGTAAGTACATAAAACCATAAAACCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTG # Right flank : AAGAAAACGTATCCTTTAAATACTGTATGAGTTCAGATAGAGTGTGAGCGCACACCTTGTTAAAAGTATGTGTTCACGATGTAGTAAACTTGTGCATTGATATTGACTTTTACTTTATATATGGTATAATAATAGGCTATTAAGTTTTATAAAATGGAGGCAATATGGATAGCGTGAAGACTATAAGGCCAAAACCACAGGATATTAAAAGAGAGTATTGGATAATAGACGCTAAGGATATGGTGTTAGGAAGACTTGCAGCTAAATGCGCCAGCATCTTAAGGGGTAAGCACAAGCCTATATATCAACCAGATGTAGATTGTGGTGATTTTGTAATAGTTATAAACTCTAAACTGGTAAAAACCACAGGTAATAAGCTAAGAGATAAAGTCTATAAGTTTCATACAAACCATCCAGGCGGTCTCAAAGAGAAGTCTCTTGGTTTCATGTTGGAAACCAATCCAAACCAAGTTATTATGTTGGCGGTAAAGAGGATGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 930705-931129 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 930705 29 100.0 36 ............................. TGATTATGAGTTATTGACAAATGATACGGTACAATG 930770 29 100.0 37 ............................. TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA 930836 29 100.0 39 ............................. TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT 930904 29 96.6 37 ............A................ GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG 930970 29 100.0 36 ............................. AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT 931035 29 100.0 37 ............................. TCTTACCTACTATTTGACCTTCATACATAATAAAGCG 931101 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 37 CTTCTTAACCCACACGGTTCAGATGAAAC # Left flank : CGATTTAAATCTATAAGTATATAGTTTAGCTTAGATGCGTATTTTTCTAATTTGGTATTTTTAACAATAGGTAAAGATGTGGGTACGTTCCATTCACCTTTTCCATGATAAAAAACAATGTTGATAATAGGAGGGTAATAATCTTTTTCTTTTATAGCTTCTTCCCAGATAGCGGCGTTGTAGTATAGAAGCTGAATAGGTAATTCTTTATCAAGATAAGATTTGTGTTCAAGTACAATCCTTATATAAGCATCTTGATCTTCTACCTTGCAGCTAAAAAGTAAATCAAGCATAAACTTTTGAGATTTAGAAGAAAACTTTTCTGTATTAACAGGTGTTATAGAGTGTATCTCTTGCCCTATATCTTTAGCAAAGATATCAAGAAGCAATTTTACCCTCTTAGGGTCAGAAAATATCTGCTTAAAAAATGAATCATGGGGCTGTATATCCATAGATCTATTTTACTACAAATTAAAAGTATTTAGAGGATACGTTTTCTT # Right flank : CAACAAGCCTTTTACAAATTTGCCGTAATTACGGTTTTGCGGTTTTATGTAATTACGGCTTTACGGTTTTACGGTAAAATTAATTGATTGTCAGACAATAAGCTGGAAGGCTAATAAAACTTATTTTTGTATAAACAATCTAATAAAACCCCTAACTAAAAAAGTTAAAAATGCCGTGGGGGTTATCAAAAGTATGTAAAAACTCTCTACACATATTCAGCTATTGAAGTACGGCCAGCTCTTAAGAAAAACTTAAGAAGCTCAATAAGCCCCAATGTAGATAGTATAACATATTTTAATCCGAAGGTGTATAAGTTGAGTGAGCACCTATAAAGACAAGTATGCCACGATTCACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTATGCCACGGTTTGGTACCTATACTTCCCTTCATGGTACCCACCACACTTAACTCCTTGTAAAATTTTAAGGAATATTTTAACAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTAACCCACACGGTTCAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 6 1024385-1023888 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1024384 30 100.0 38 .............................. AGTTTGTTTTTTATCACAAAGCCCCAATTTTTAATCTT 1024316 30 100.0 37 .............................. TCCATAATCGGCACTTTATTAGTTTTGATGTCAATGT 1024249 30 96.7 37 ...............G.............. AATGATACCACACAAGAAAGCGACACACAAGAAGGAA 1024182 30 100.0 34 .............................. TATTTTAATATTTGATTCATTATTTCCCTAATTT 1024118 30 100.0 39 .............................. TTTGATTAAAGAGTTTGACTTTACACCATCATTGTTTAA 1024049 30 96.7 36 ......C....................... TCCTCCTCGAATATCGGCGTGACGCCGACTTGAAGA 1023983 30 96.7 36 ......C....................... AATCTTCTATATCGTCTAATATACGCTCTATCAATA 1023917 30 86.7 0 .........................T.CTT | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.1 37 GTTTTGTTTGTACCTATAGGGGATTGAAAC # Left flank : GACACCTGCGCTGGGGAGTTTAGGGCTTATACGCCTTATTATTACTCCTCTTGGGAATATCCATACTATAAAATCGGGCAAGAAGAAGCTATTTTTGACAACGACTAAATTTTGCATAAGTCCAAAAACTACTGCCAAAGATAGACATAAATAAACCATCTCATAAAGATTTTATTTCCTAATTTTATTTTCTAAAAGCCTAAAAATGTTAATATAATTTCTAAATTATTAACATCAAAATCCCCAAAATCATTGTCTATCAACGATCTGTCGATCGGCAAAAAATTATTAAAAAACGCCTTGTTTTCAAACAAAAAAATACCTCATTTTTGGCATCTCAGCTATATCTGACAAAGAATTGTCGATCTCCTATGATTTTGCTCCTATTGACGATCGACGGGAAATATGTTATATTATAAGCTGTTGATAGGTTGATGGGGTACCTCAAAAACCTTGCCGGCGAAGGGTTTTAGGGTAGTTCACAATTTTTTCATTTTGGT # Right flank : TTGTAAATAATGTTAGTAGTAGCAATTTCTGGTTTCATCTGAGCCGTCTGGGTTAAGAAGCTGTGAAATCATATCCTTTAAATACTTTTGATTTGTAGTAAAATAGATCTATGGATATACAACCTCACGATACATTTTTCAAGCAGATATTTTCAGATCCCAAAAGATTAAAGATGCTTCTTGATATCTTTGCAGAGGATATAGCACAGGATATACATTCTATAACACCCGTTAATACAGAAAAGTTTTCTTCTAAATCTCAAAAGTTCATGCTTGATTTACTTTTTAGCTGCAAAGTAGAAGATCAAGATGCATATATACGGGTAGTACTTGAGCACAAATCTTATCTTGATAAAGAACTACCTATTCAGCTTTCATACTACAACAGTGCTATCTGGGAAGAAGCCATAAAAGAAAAAGAGTATTACCCTCCTATTATCAACATCGTTTTTTATCATGGAAAAGGTGAATGGAATATGCCAACATGTTTACCTATTGTT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTGTACCTATAGGGGATTGAAAC # Alternate repeat : GTTTTGCTTGTACCTATAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 1088763-1092095 **** Predicted by CRISPRDetect 2.4 *** >NC_015557.1 Hydrogenobaculum sp. 3684, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1088763 29 100.0 39 ............................. ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC 1088831 29 100.0 40 ............................. CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA 1088900 29 100.0 36 ............................. TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA 1088965 29 100.0 35 ............................. TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT 1089029 29 100.0 38 ............................. TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA 1089096 29 100.0 37 ............................. CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT 1089162 29 100.0 37 ............................. ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT 1089228 29 100.0 36 ............................. GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA 1089293 29 100.0 35 ............................. ATCTCCTACAGCACTCCATTGATAATATGTTATTT 1089357 29 100.0 36 ............................. TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA 1089422 29 100.0 36 ............................. TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT 1089487 29 100.0 38 ............................. TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA 1089554 29 100.0 39 ............................. AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC 1089622 29 100.0 40 ............................. CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG 1089691 29 100.0 37 ............................. TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG 1089757 29 100.0 38 ............................. TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA 1089824 29 100.0 36 ............................. TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG 1089889 29 100.0 37 ............................. GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG 1089955 29 100.0 36 ............................. TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC 1090020 29 100.0 39 ............................. GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA 1090088 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1090153 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1090219 29 100.0 36 ............................. TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA 1090284 29 100.0 37 ............................. TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT 1090350 29 100.0 36 ............................. AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG 1090415 29 100.0 36 ............................. ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC 1090480 29 100.0 37 ............................. TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA 1090546 29 100.0 36 ............................. GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA 1090611 29 100.0 38 ............................. GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA 1090678 29 100.0 37 ............................. CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA 1090744 29 100.0 36 ............................. TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT 1090809 29 100.0 36 ............................. CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG 1090874 29 100.0 36 ............................. TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT 1090939 29 100.0 37 ............................. TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA 1091005 29 100.0 36 ............................. AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA 1091070 29 100.0 42 ............................. ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA 1091141 29 100.0 37 ............................. ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA 1091207 29 100.0 36 ............................. GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT 1091272 29 100.0 36 ............................. CTACCAATCGCATCTACGCCTATCACCTTCCAACCA 1091337 29 100.0 37 ............................. TTGATTACAAACATTATCAACGCACTTGTAAAACAAA 1091403 29 100.0 37 ............................. GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT 1091469 29 100.0 37 ............................. TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT 1091535 29 100.0 37 ............................. GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG 1091601 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1091666 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1091732 29 100.0 41 ............................. ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG 1091802 29 100.0 36 ............................. ATTACTGAAAAATTGCAACAATTATTAAACTACATG 1091867 29 100.0 39 ............................. CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA 1091935 29 100.0 36 ............................. AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT 1092000 29 100.0 38 ............................. ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA 1092067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 51 29 100.0 37 GTTTCTAATTAACCGTGTGGAGTTGAAAG # Left flank : ATAAATAACTTCAATGATTAAGGGCTTTATAAAAGCCCTGTGAACTTCAACAGCTGAATATGGCGTTAGAGTTTCTAATGAAGATATTCTTCCGCTTTAACAACTCCGCCGTATTTTTCTTTATATTCTTCTAACTCATTTAGCTTTTGGACTATCAGATCTCCCATAGATATTTTCTTGGTTATAGCCTCTATGCGCAAAGCCCGGTGAACATCGGAAGGTAATAAAACTGTTGTTTTAACCAATTTCTTGCCTTTTTTCCTCATAGATTTAAATATATAATCTTGCCGTAAAACCGCAATGCCGTAATTACATAAAACCGTAAAACCGTAATTACGGCGAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAGTGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGGAAATTACCTTCATTTGCGATGGGTACCCCCTTGACAAAACCATTGATACACTATATAATTTTAAATATAGTGATTTCTGG # Right flank : GTTTCATTCTACTTTGTAATAAAGGGTTATCTCTTTGTTGTCCCTTATGATTTTTACGCTGAAGCTTTGGCTGTTTCTTAATGTACCTAATATTCTAAAAGCATCTTCTGGAGAGTTTAGGCTTTCGTTGTTTATAGAAAGAAGTATATCACCTGGTTTTATACCCATCTGGGCAAAAAGCGATCCTGGTTTTACGCTTTTAAACATAAAACCTTTTGGAGTAGGTACAAGGTCTATATCGCTAAACATCTTGTAGGGGTTTGATGTAATTTCAAGAAGCTCGTTTCTATTTACTGTATAAGTATTTTGATTTAAACTACCGCTTAAAAGCTCTTTCAAAGAAGGAAGACCGCTTGGTGTATTGGCACTGTTTATCTTAGCACCTTTTGAAAGTTTTAGAGTAAGGGTTTTGCCGTCGTTGCTTGCTATTATATAAAAAGGTTTTATCTCTTCTATTGTAAAACCGCAAAAACTATCTCCTACCATAAGCACTTTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTAACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //