Array 1 85240-84547 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PTUU01000019.1 Enterococcus faecium strain CVM N59711F N59711F_S50_L001_R1_001_contig_19, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     85239	    36	 100.0	    30	....................................	TAAATGTTAAGATACCATAGTCTACTTTAT	
     85173	    36	 100.0	    30	....................................	TTTTCGGAACAATATTGTTTTTAATTAATT	
     85107	    36	 100.0	    30	....................................	TTATTTTAATTATAGGGTGAATTGTGCCTA	
     85041	    36	 100.0	    30	....................................	AAACTAATTTGTGAGCAGTTTGATTTGGAT	
     84975	    36	 100.0	    30	....................................	ATTTACTATGAATAAGTGACAAAAAATCAA	
     84909	    36	 100.0	    30	....................................	ATGAATTGTTTGAAGATGTAAATGTAACAT	
     84843	    36	 100.0	    24	....................................	GCCTGGTGGTGGCGAAGACGGAGA      	
     84783	    36	 100.0	    30	....................................	TTGTTAGTTTTCCTTTACTTATTTCTTGTA	
     84717	    36	 100.0	    30	....................................	GTTTGATGATACTATTGTACGTGACAGTGA	
     84651	    36	 100.0	    30	....................................	CCATTTCCTACGAAGCTTTTTTCTAGCTTC	
     84585	    36	  91.7	     0	.........................A....T....A	|                             	G,CA [84550,84555]
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.2	    30	GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC	                              	       

# Left flank :   GCCAGCTCAATGAAAAAGTAGAAGTGAAATCAATGATTGATAAACTGACAGCGACAATCAGTGAGCTGATTGGGTACGAGTTGTTGGATCACGAACTCGATTTAGAAGGAGACGAGATCACGGTCTTGGAATTATTCAAAGCATTGGGTATCAAGATCGAGACAAGAAGTGATACTATTTTTGAGAAATTACTTGAGTTGCTTCAGGTTTATAAATACTTGTCTAAGAAAAAATTATTGGTTTTGATCAATGTGTGTTCCTATCTCACGGAAGAAGAAATAAGCGAAGTGCAAGATTATATTTCGTTATATCATATGGAAGTGCTATTTGTAGAGCCGCGTTCGATCAAAGGGATAAAACAATTTGTCTTGGATAAAGACTATTTCTTGAACTTGGAAAACATGGTATAATGGTAAAAAAGAGAAGCGTTCAAAGCTGAAGTTTTGCTATGAACGAGTAGCGTGATTATGAAACATTGACGGAAAAATTTTTTCTGCGAG
# Right flank :  ACAGCCTTGCACTTATCGAAAGAGGATTAGTGTCAAGGGTGTTTTTCATATGAGTGGACGGAATTATCTGTTTTCTTTTACAATTGATAATAGATACTTTGCTGTATAGTCAGTAGCTGATATAAAAGTATCGGCTCTTAAATGGAAAAAAGATAGGTGGCGACGCAATGTTTAACACACAATTGATCGGTTATTTAGAATGGATCATTGCTATTTTAAATATTTGTTCTATCGGTATCTTAATTGCTGGGATCGTTCTTGTTCTATTCAAACTTTTTGATTGGTCTCATGTCAAGAAAAACTATGCAGAACGTAATGCTCGTAATGCAGATACAAGAAAACTGTTAGCAAGTTATATTTTGTTAAGCTTGGAAGTACTAGTCGTTGCTGATATCATCGAGTCAGTTATCAAGCCGACTTGGACAGATATTTTGAAGCTTGCACTTATTATTATCATTCGAACAGTCATTTCTTATTTCTTGAATCAGGAAATAGAAGAC

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//