Array 1 32081-31333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFDF010000008.1 Escherichia marmotae strain EC115 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32080 28 100.0 32 ............................ AAATGAGGTTGCCTACAATTCATATATTAATG 32020 28 100.0 32 ............................ CACAATCCCCAACGCCGCGCCAACGCCGTTAA 31960 28 100.0 32 ............................ TGGCATTGAGTCAGTGATTTTGCCGTTGGTGT 31900 28 100.0 32 ............................ TGATCCGGATGCGGTGATAAACCGTGCCGCCG 31840 28 100.0 32 ............................ AGCGAGAGCATTAAGCGCCTTAAGCACTTTGA 31780 28 100.0 32 ............................ TCCCCGCTCACGCCCACGTTAAACGTTATACC 31720 28 100.0 32 ............................ CAACTCCGCAAAGTGAATTGTGGTCGAAATGC 31660 28 100.0 32 ............................ TTTATTTAAAGGGACTCACCCCGAAAGAAATC 31600 28 100.0 32 ............................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 31540 28 96.4 32 ...........T................ TCATCCAGCGTTTTTTCTCGGTGATCAAATGC 31480 28 96.4 32 ...........T................ GTAACGTTATACGAGGCGAGCGCCGCAGATAT 31420 28 96.4 32 ...........T................ TGACCGTATTTTTTCTCCCAGGTCTTTTTGCC 31360 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47009-45840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFDF010000008.1 Escherichia marmotae strain EC115 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47008 28 100.0 32 ............................ TGATCACGCGAGTGTATCTGCGAAGGTTCAGC 46948 28 100.0 32 ............................ ACAGGCACCCGACTGATGTTTGTCGGTGACAT 46888 28 100.0 32 ............................ AATTACATTTGGTCAATGCCTGGCTGGCAGTA 46828 28 100.0 32 ............................ ATCAACAGTCCGCGTTGGTAGAAATCAATTTT 46768 28 100.0 32 ............................ ATCCGCAATATCGGTAATCGTTCGTTGAATTC 46708 28 100.0 32 ............................ GCTTCCAGGTACTTTTCAGCCCACGGCAACCA 46648 28 100.0 32 ............................ CCTCCGCGATTCCCAGCGTACTGGCTACAGAA 46588 28 100.0 32 ............................ TGGAACGTGGGCTACGAGCGCCGCAGCGTCAT 46528 28 100.0 32 ............................ TTTCTTCAGGTGAACAAAATGAAGTCATTCAA 46468 28 100.0 32 ............................ GGCAGACGGTTTTACCCTGGGCGGTGCGTAAT 46408 28 100.0 32 ............................ AAAATCCACCAGCTTCTGAATGTGTTCATTTT 46348 28 100.0 32 ............................ TGGATACGAGAACAAATTGAATCACTGCCTTA 46288 28 100.0 32 ............................ ACTAATGCCCGTCGGTAGCGTTGCAGAGGCAA 46228 28 100.0 32 ............................ AGACGGCAATTCGTGTTTTACCGTCGAGCGTC 46168 28 100.0 32 ............................ CGGTGTGCGTAGCCTGTCGTTTCGTGAGAACG 46108 28 100.0 32 ............................ TTATCGGCCAGCGTTCCGCCGTCATGCGCAAT 46048 28 100.0 32 ............................ GTGTTATCTGAAACAGGAGTGTTTATGGAACT 45988 28 100.0 32 ............................ AGCAGATCCCCGGCGTTTTGCGTCAATCCGGT 45928 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 45868 28 92.9 0 ....................T...C... | C [45845] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //