Array 1 19239-26165 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTS01000045.1 Halomonas stevensii S18214 Contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19239 29 100.0 32 ............................. CCGAGTTCATCGAGGCGTTCCGCGACAAATAC 19300 29 100.0 32 ............................. TGGCCCCGCCGGACCTGCCCGCGCTGGATGCC 19361 29 100.0 32 ............................. CGCTCGCCGTTCGCGTCAAACACCACGGTATC 19422 29 100.0 32 ............................. TGGCCACGCCGGACCTGCCCGCACTGGACGCC 19483 29 100.0 32 ............................. AGATCCACTTGGCGCTAGACGAAGAAATGGAG 19544 29 100.0 32 ............................. TCGCTGCCATTCAGGCGTTTGCCGATCTCGAT 19605 29 100.0 32 ............................. GCGGTCTTTTCGGGTACTTGGCCACCCAGCAC 19666 29 100.0 32 ............................. CCCGACATGGAGGCGTTGTTTTCGACCGCGAT 19727 29 100.0 32 ............................. GTGAGCAGCACACCTGCCGTGCTGGCCAGTGC 19788 29 100.0 33 ............................. CGGTGGTGCACCAGCGAGTAGGCGGCGCTGTGC 19850 29 100.0 32 ............................. TTGTCCTTCGCCAGTTCGCTGAACAGCAGCAC 19911 29 100.0 32 ............................. GCGGCGGTAAGAGCTGCAGCGACGCCCGCTGA 19972 29 100.0 32 ............................. CCCTGGCCGCGGCCGGGATCCCTGCCTGGACG 20033 29 100.0 32 ............................. CCGCCGATGCCGCCCATAGCACCGCCGCCCAT 20094 29 100.0 32 ............................. GGCTTGATTAAAGCTCAAATGGGAGAGGCAAA 20155 29 100.0 32 ............................. CCAGATAGTGGCGTTGAAGGTGCTGAAATTGA 20216 29 100.0 33 ............................. CGAAACTGGGGATACTGCGGGCTGGCCTCGGGG 20278 29 100.0 32 ............................. AAAACCCACCCAGCCAGACGTAGCCATGCCAG 20339 29 100.0 32 ............................. ACGAGGCTTTGGGCCAGCGTATCGACTCGGTA 20400 29 96.6 32 ............................C GAAGCCACTACCCGGGCCTCAGAAGATGAGGC 20461 29 100.0 32 ............................. GGTAATGGCTCAGCCGTCGTTGGCGGCGTCGC 20522 29 100.0 32 ............................. GTGACCTGGTAATCAAACGTGCCAGCGTCGAT 20583 29 100.0 32 ............................. TATGGCCGCAAGGCAGGTACCTGGCACCGCAT 20644 29 100.0 33 ............................. CGGCAAGATCGCCCCGACTGGGCAGGTGTCTGC 20706 29 100.0 32 ............................. CCGCATACCTGGCAACCAATCGGCAGCGAGCG 20767 29 100.0 32 ............................. TCGCTATTAATGGCGGCATCGTAGCGCACATC 20828 29 100.0 32 ............................. GAAGCCACCACGCTGGTAGATGACACGGGCGA 20889 29 100.0 32 ............................. TACGCCGACGCACGCGACGGCACCATCAGCGC 20950 29 100.0 32 ............................. CCGGTCCTTACGCATGATCTGCTGGGCCTGCA 21011 29 100.0 32 ............................. AACGGCAAGCTGTGCCCGGATGGCCACTGGCG 21072 29 100.0 32 ............................. GCTCAAGGAAGGGATGTGCTTCCCTAATGGCC 21133 29 100.0 32 ............................. TGGGGCCAGAGGCGGGCGTGCATGGCCCCGTG 21194 29 100.0 32 ............................. CGATGGGTAACGCCGCTGGGGCCACTGATGAG 21255 29 100.0 32 ............................. GCACTTCAATCGTTGCCACGGCGTCACCGTCA 21316 29 100.0 32 ............................. ACTATGCCAGCGATGTGGCGGCGCTGGGCGTT 21377 29 100.0 32 ............................. CCGATTTTGTGCAGCTTTCCGATGCGGCGGTG 21438 29 100.0 32 ............................. CGTTGTACCACAATTTGAATATGCGCAGCGGT 21499 29 100.0 32 ............................. GCTACTCATCGTCACGCTTTGGCTTTTCAGTA 21560 29 100.0 32 ............................. CGCCAGCAAACCGCCCTGACCAACACCGGAGG 21621 29 100.0 32 ............................. GCCAGGACAGCCTGCGGGCGGCCGATGCCGAT 21682 29 100.0 32 ............................. TTGCTAGACCACTTCATGATAGTGGCCCTATC 21743 29 100.0 32 ............................. CCTATTGTGCGGCCTATGCGCGGTGGCGAAAG 21804 29 100.0 33 ............................. CGTTTGGCCGCCGGTAATGCGGTAGAACCCCGC 21866 29 100.0 32 ............................. CCATGTCAACGCTGCGCCGCCAGCTGAAAGAG 21927 29 100.0 32 ............................. CGCCCGATCATCGCTAAACCCCATCTCTCTTG 21988 29 100.0 32 ............................. CCGCTGCCGAGCGCATGAAGGTCGTGGGTGGT 22049 29 100.0 32 ............................. GCCTACCTTGACCTGGCCATGGATGCCAAAAA 22110 29 100.0 32 ............................. TAGTCGATGTTCTTACCGGCGGCGTTACGCGC 22171 29 100.0 32 ............................. TCCGAACGCGGGCGCAGCTGTCGATCTTCACT 22232 29 100.0 32 ............................. GCTCATGCCCACGCTGGCACCTCTCCTTACCG 22293 29 100.0 32 ............................. TTGCTTTGTAGCGCTTTGGCGCTGCGTCCGTT 22354 29 100.0 32 ............................. GCTTGGCGCGCTTCCAGCTCCGTCAGCTGAGC 22415 29 100.0 32 ............................. CGTGGATGAAAGCCGACCTAGTGCAGATGCTC 22476 29 100.0 32 ............................. GGTTACGCTTTACGTCGACTTCTCGGTACAGG 22537 29 100.0 32 ............................. CGCCGCTTAGCCCATCAGATGGAGCTATCCGC 22598 29 100.0 32 ............................. TCACGGTGGGGCTGGGTGATCGATTTGCGCAG 22659 29 100.0 32 ............................. CACCCCGGAAATGCGCTTTGGTCCATCCATCC 22720 29 100.0 32 ............................. CGGATAGAGCGGCTCGGCAATGACATGGAGAC 22781 29 100.0 32 ............................. CGCGTCTGCCAGCCCGCTAACGGTTTCAATGC 22842 29 100.0 32 ............................. TCATAGCACCGGAGAAGAGTAGATGCGCGAAT 22903 29 100.0 32 ............................. GCCGCTCAAGCGCCCAATCATTGATGAAATGG 22964 29 100.0 32 ............................. TGCGGGGGTTTTTGAATGTTCTTCCAGCCCAT 23025 29 100.0 32 ............................. TTCGCCTAGCGATTTATGCTCGGCAGCCGGAT 23086 29 100.0 32 ............................. GGATCGACGGCCTGACCGTCACGCTGGCGGGA 23147 29 100.0 32 ............................. CGGTAACCGTGCATTTCTGCGACTTGTTCTAG 23208 29 100.0 32 ............................. CGCCCTGAGCAGTGCCGAACAGCAGGCCCGTA 23269 29 100.0 32 ............................. ATAACAAAAATTTGAACGATCATCACGATTAG 23330 29 100.0 32 ............................. ATTTGGCGCTAGGTCACGGGGCGATAAGCGCA 23391 29 100.0 32 ............................. CCAGCGGCGACAAGCTCCCCCAGCAGCATCAG 23452 29 100.0 32 ............................. TTCGGCGGCCATGAGGAGAGCTTCGACAACGC 23513 29 100.0 32 ............................. CGACGCGCTGTCCATGCCGCCATTTGGCTCTG 23574 29 100.0 32 ............................. GCTTTCAGACGTGGCAGATGAAGCGCGGCAAT 23635 29 100.0 32 ............................. GCAGTGATTATGAAGGGTATTGCGCGGTGCTG 23696 29 100.0 32 ............................. GCATGGATAGCGTGACGGTCTGGTGGTATGAG 23757 29 100.0 32 ............................. CATGCTCGACCAGCTACCCAACGCCCGCCGCA 23818 29 100.0 32 ............................. ATATTGTAGAGTGCATCTATGCGAGCTTGCAT 23879 29 100.0 32 ............................. TTCCAAACACCTGGCTGAACATCAACATTTGT 23940 29 100.0 32 ............................. AAAGGCGACCCGGCCACGTTTAACCCGCCGGG 24001 29 100.0 32 ............................. ATCGACTTTGAGTCGAAATCTTGGGCCGGTGC 24062 29 100.0 32 ............................. CTGGAATACGACAACGATGAGCTAAATAACAC 24123 29 96.6 33 ............................A GTGGCTGAGATCGAGTGGGAATACGCGACGAGC 24185 29 100.0 32 ............................. CGACAACATCGCCTGCCGTTGACGCCCATGGC 24246 29 100.0 32 ............................. ACGCAATGCCCAACCGAGACCCGAACAACTGG 24307 29 100.0 32 ............................. GTAAACGTATCGCCTAGCGTTAACTGTGACGC 24368 29 100.0 32 ............................. TACTCAATCCCCCATGCTTCGGCCTACCTGGT 24429 29 100.0 32 ............................. CGATCCGGGGTGGACCACCACTCGTACACGAG 24490 29 100.0 32 ............................. CGGCGAGAAGAGGGCAAGCCGAGATCGAGCGT 24551 29 100.0 32 ............................. ATCGCTCTCCTATTTCTGATGATTCTCGTCTT 24612 29 100.0 32 ............................. ATCGCTCTCCTATTTCTGATGATTCTCGTCTT 24673 29 100.0 32 ............................. GCGCTACAGGCGCTGCTACGGGAGCCGTATGA 24734 29 100.0 32 ............................. GAGACTGGCGGCGTTGAGACCGTGAAAACCAA 24795 29 100.0 32 ............................. TATTGTTAATAACTTTAATATTCTCACATGGA 24856 29 100.0 32 ............................. GGCAGGTCTAGCGGTTCTGGCTGGATCACTAA 24917 29 100.0 32 ............................. CGGAGAAGGCCACGGAAGAGAGCAAACCCAAG 24978 29 100.0 32 ............................. TTCCGCGACGTGGTTCTGCAGAACGCGGTACT 25039 29 100.0 32 ............................. TCAGTGCGTAGCAGCGGGTTGACGTGGTTAAT 25100 29 100.0 32 ............................. GCGACAGGCAAGTTGTTCGGGCAGCGCATGCT 25161 29 100.0 32 ............................. AAAGAGTGGCCGCCGCATCCTGGTATGAATGC 25222 29 100.0 32 ............................. TTCGATACGCTGATAACAATGCAGGCGCACCA 25283 29 100.0 32 ............................. GTGAACCCGTTGGTGGGCGTGAACGCCGAGGA 25344 29 100.0 32 ............................. TCACCAGCCGCCGCGAAACTGCGCAGATGATG 25405 29 100.0 32 ............................. GCGATGGCTGACGAGTATGGTATTAAGCGCGA 25466 29 100.0 32 ............................. CTTGGGGTGAAGCCATGTACCTTGAAATGAGC 25527 29 100.0 32 ............................. GCTCTGTGTGTTAGCGGCGGTGGATGCCGCGC 25588 29 100.0 32 ............................. CCTATCTACTAACTCGATGGCGGCAGGCATGT 25649 29 100.0 32 ............................. GACGCTGAATGCCGCTCTGGCAGCCAGCAAAG 25710 29 100.0 32 ............................. AGCGTATTCCAACAGGCACCGATAACGGCCAA 25771 29 100.0 32 ............................. CCAGGCTTCCGACTTCGCTGGCGATGCATGGC 25832 29 100.0 32 ............................. TCGGTACGTCAGCGTGATTTGCTCGTTGGCTT 25893 29 100.0 32 ............................. TTGGGAAAACTTCCTGGTGGCATGGCGTGAGG 25954 29 100.0 32 ............................. CATTTTAGGCGATACTTGAGGGGTCGAAGCAG 26015 29 100.0 32 ............................. GCCGGCCGATTGACCTGGGCGGGCGGCGCCGA 26076 29 100.0 32 ............................. CGAAGGTGTTGGTGCCTTTGATGGTGCCAGTA 26137 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 114 29 99.9 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : GGCGAGATTCAGCCCCCACCTCCAGCACCTGATGCTGTGCCACCTGCAATTCCAGAACCACCGTCGGTCGGTGATGCCGGGCACAGGAGTGGATAAATGGCGATGCTTGTAGTGGTTACAGAAGCCGTGCCTCCACGCCTACGTGGCAGGTTAGCAGTGTGGCTTTTAGAGATTAGAGCCGGTGTTTATGTGGGTGATGTAAGCAGGCGCATCCGCGAGATGATTTGGGAACAGGTCGAAGCGTTGGCCGAAGATGGCAACGTCGCCATGGCCTGGGCAAGCAACCATGAATCGGGGTTTGAATTCCAAACCTACGGTGAAAACCGCCGGGAGCCGATTGATCATGACGGATTGCGTTTGGTGCGTTTTTTACCGCCCCAAGTTAACTAGCTGATTTTATTTGCTCTTTAACAATTTGAAGTGGTTAAAAAGTAAGCAAAATAGCTGGTGGAATTTTTATCTGCTATTTTCTTCATGTAGATCAAGTATCTACAACAAGT # Right flank : GGCCTGGCCGTGCTTCGCCGGGCGGCCGCGCCCTGTAGTGGTTCAATAAAACCGGGCACCAACGTAGGTGGTAATATTGCCACCAGAAGCGAGGTGTCTGATGACCAAGAAACGACGTACTTTTTCTCCTGAATTCAAGCAGGAAGCAGCCTGCCTGGTGTTGGACCAGGGCTACACCACTCTCGAAGCATGCCGGTCGCTCGGTGTGGGTGAGACAGCTCTACGACGCTGGGTACAACAGCTGAAAGATGAACGTGAGGGCATCACCCCAAAGGGCAAAGCCTTAACCTCCGAGCAGCGCCGGATTCAGGAACTGGAAGCCCGTTGCAAACGGCTTGAGATGGAGAAAGAGATACTAAAAAAGGCTACCGCTCTCTTGATGTCAGACGACATGAATCGTACGCGCTGATAGACCAGTTGAGTGAGCAAATGCCTGTTGAAATGGTCTGTAACGCGTTTGATATTAGCCGCTCCAGTTACTACGAGTACCGCCAGCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //