Array 1 1618218-1618906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056697.1 Escherichia marmotae strain RHBSTW-00605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1618218 28 100.0 32 ............................ GATCCGCGAAACGCTCCCGAGCCTCCGATACT 1618278 28 100.0 32 ............................ AAACCTCGGCGCAACGGCACCGGCCACCGGCG 1618338 28 100.0 32 ............................ AACCGGCCTCGGTATTGTGAGTTCGTCGACGC 1618398 28 100.0 32 ............................ TAAAATCATCGCGGCACAATAATGCGCAGTCT 1618458 28 100.0 32 ............................ GACGAGCTGTCGATGAGTCGCCCTGCGCCCAT 1618518 28 100.0 32 ............................ GGTTGCGAACGTCCACACCGTCGATAGCGCCT 1618578 28 100.0 32 ............................ ATAGCAACCAGAAAAATAGAAACGGATGAACC 1618638 28 100.0 32 ............................ ACCCGCCGCGCCCGGATATCAATTCCGAAACG 1618698 28 100.0 32 ............................ AGTGGCTGTGTCGAACACGACTTTCTGTCCGA 1618758 28 96.4 32 .....T...................... GAAGAAAAAACAGTGGTACTACCGCCCCGCAG 1618818 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 1618878 28 92.9 0 ....................T...C... | C [1618901] ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGTAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1633168-1633795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056697.1 Escherichia marmotae strain RHBSTW-00605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1633168 28 100.0 32 ............................ ACAAGCCTTACCGAAATCGCGAACATCATACA 1633228 28 100.0 32 ............................ AGCGCCGTGGCAATCGGACAGAAAGTCGTGTT 1633288 28 100.0 32 ............................ GTCGGCGATTAGCTCTGCCAGACGCTGAGAAA 1633348 28 100.0 32 ............................ AACTACCGTTGTGCTTGAGCACGTGATGTTCT 1633408 28 100.0 32 ............................ AGTACACTGATTTATCACTGTCTGCCAGTGGC 1633468 28 100.0 32 ............................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 1633528 28 96.4 32 ...........T................ AAAGCTTGATGACATTTTAGAAAATTCAAAAG 1633588 28 96.4 32 ...........T................ ATGTACGAGGTTCGTGACGCGAGTGGCGTTTT 1633648 28 96.4 32 ...........T................ TCATCCAGCGTTTTTTCTCGGTGATCAAATGC 1633708 28 96.4 32 ...........T................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 1633768 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //