Array 1 14095-10699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXS010000077.1 Yersinia rochesterensis strain IP35638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 14094 28 100.0 32 ............................ CAGACGATGAGGATCGTGAATGGCGTTCGGTC 14034 28 100.0 32 ............................ GACAAGCAGTAATCGATACCATCAAACAGCTA 13974 28 100.0 32 ............................ TGAATTTTCCAATAGCTATCTAGCCATGCTGA 13914 28 100.0 32 ............................ TCGCAGAGGTGGCGGTATTGCTTCTTGGATAG 13854 28 100.0 32 ............................ TGCCACTTAACCGGTGGCAGCAATAAGACCAC 13794 28 100.0 32 ............................ CAGCCAGTGTGAGTATTCTTCGCTGGCCAATG 13734 28 100.0 33 ............................ TGTTGGCCCACTCAATTGCAAGCCGTGATTCAT 13673 28 100.0 32 ............................ ATTTCATGAGATACGAAGTTTAGCTTCACGAC 13613 28 100.0 32 ............................ AAGATAGAGGTTAAGCGTGCCAGATTATCACT 13553 28 100.0 32 ............................ GCACAAGGTGTGCTACTGCAAGGTCAGGCTGA 13493 28 100.0 32 ............................ AAGAAATTTTAGCAACCGGGTTCCTGACGTCA 13433 28 100.0 32 ............................ CCGATTTATTAGTGCTAATCAGCGGTGAAATA 13373 28 100.0 32 ............................ TTTATGCGGCTCGTTGACGAGTGCAGACCTGC 13313 28 100.0 33 ............................ CGTTAACGTTCCGCCAGTTAGCGACAATTTAGT 13252 28 100.0 32 ............................ ATGGTGGCGCGCCATACATGATGGTGGGTGCG 13192 28 100.0 32 ............................ TTGAAACGGTTGAGCCATTGCAGCGGCGTAAA 13132 28 100.0 32 ............................ AAATAAAAGAATCAAACCTCTGGTGGTTAAAT 13072 28 100.0 32 ............................ AGCGGTCAATTCGTTTGTGTTGGCATCATGAT 13012 28 100.0 32 ............................ ATCGACCTGATCCAGTTTACGCACCTTGACTT 12952 28 100.0 32 ............................ AATGGCTGTGGAGCTTACTGACATCGCGTACT 12892 28 100.0 32 ............................ CCTCCGCTAATCGAATTGTGCATGAGCCTCCG 12832 28 100.0 32 ............................ GAACGGGCATGCGTCAATTTTCACATAGAAAT 12772 28 100.0 32 ............................ AACACTGGCGACCGGTCAGCGGCAACCAACAC 12712 28 100.0 33 ............................ CTCCAGACCTCGGCATTTAAGGAATGACTATGA 12651 28 100.0 32 ............................ ACGCTCACCACGCAAGGTGTAAATTAAGCGTA 12591 28 96.4 32 ...........T................ ATCATGCGGCCACGTACCTGCTGCCACATAAA 12531 28 96.4 32 ...........T................ AAACAATCCAGAGCAGCTTCATATAAGTCTGT 12471 28 96.4 32 ...........T................ AATGGCTGTGGAGCTTACTGACATCGCGTAAC 12411 28 100.0 32 ............................ CCTTAACTATGTGGTTAATAACTCTAATATTT 12351 28 100.0 32 ............................ AGCAAATAGCATGATTAGAAATCTGTTTATTT 12291 28 100.0 32 ............................ AATGGTTCCAGCAGCAGTGACACGATATGTAT 12231 28 100.0 32 ............................ AAGCCGGTAAACTCAGGAACCAGTACGCTTGC 12171 28 100.0 32 ............................ AAAGCATGAAGAGTCAGAACCGGGCAGAAATT 12111 28 96.4 32 ..........T................. AAATACCTTGGCATGAGCCGCAACGCCGGGCA 12051 28 100.0 32 ............................ AAATATAAAAATGGAAGAACCAGAAACCAAAA 11991 28 100.0 32 ............................ TTGCTCTGACAAGATTGCGCGGCCCGAATCAA 11931 28 100.0 32 ............................ ATTCCAGAAGATGGATGATGGCCGATACCAGA 11871 28 100.0 32 ............................ CAACGCAAAAGCCGCTGGCACTGATGGAGTAC 11811 28 100.0 32 ............................ TATGCGGTCTGCGTAGCCGTCGAACTGATTAT 11751 28 100.0 32 ............................ GTAGCGCCAGTAATACCCCACGCATAATGCGC 11691 28 100.0 32 ............................ GGAAGATGGCAGAAAGAATATCCATTCACCCT 11631 28 100.0 32 ............................ TAATGGCATGAATACGACACCGAGCACCATTA 11571 28 100.0 32 ............................ ATAACGGCGGAAAGTGCTGTCCGGGGAGTAAC 11511 28 100.0 32 ............................ GTGAGTTTCAGCTCTGCAACAGTGAACTGCTC 11451 28 100.0 32 ............................ CACTCGATTGAAAAGATTTACTAGCGACGAGA 11391 28 100.0 32 ............................ AGCAATAGTGCGGGCAGTTGCCAGTTTTGTCG 11331 28 100.0 32 ............................ AGTCAGCATGAGCAGGCGCACAAGCTTCGCCA 11271 28 100.0 32 ............................ ATCTTGGTACTGGCGCTGAGTTCATGTTTTAC 11211 28 96.4 32 ...........T................ ATAATTGTCTCCGTTGGTTGGCATTATCACAG 11151 28 96.4 32 ...........T................ AGAAAGGCGGCGTTCTTTTTTATGTTGTGGTT 11091 28 96.4 32 ...........T................ GCTTAGTGCCATTAGCGATATCAGCACGAAGG 11031 28 96.4 32 ...........T................ AGTACGCATCCTTTGTGCTCGAGAGCTGCAAA 10971 28 96.4 32 ...........T................ GTAACGGCTAAATCTGCAACTCTATCTATTTC 10911 28 100.0 32 ............................ CGAAATAGCGTGCAGAACCGTCCCAGCCCGAG 10851 28 100.0 36 ............................ AGCAATAGTGCGGGCAACCTAAACCGTAATCCTCAA 10787 28 96.4 32 ..............C............. AATGGCAAATTAGATGCAAGTCGGGCGTTAGC 10727 28 100.0 0 ............................ | T [10704] ========== ====== ====== ====== ============================ ==================================== ================== 57 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGATTCAATATCGGGTCGTGCGCCGTGTGCAGGTGAAAAGTAATGTGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCTGATAATCGCGAGCAGCAGTGTAATTTGCCTTTTTTGCGCTTAAAAAGCGTATCCAGCGCGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGGAAACTCCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTACCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCGTGTTTCATTACT # Right flank : TCTATCCGACTTCTTATTTCTCCTTTCTCGCTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23798-22990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXS010000077.1 Yersinia rochesterensis strain IP35638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23797 28 100.0 32 ............................ TCTACTTAATAACGTGATAGCAATCTTCACGA 23737 28 100.0 32 ............................ GCTTAGTTCACCGATTGAATGGATGCGACAGG 23677 28 100.0 32 ............................ TTCGACTGATTGCTGGAATGCTTCGGCGGGGA 23617 28 100.0 32 ............................ AACGGAGACAATCATGTCTGAACAAACCGGAC 23557 28 100.0 32 ............................ ATAATGTCATGACAGTGCTGGGGAGTGAGTCG 23497 28 100.0 32 ............................ AAATGCGGCGCATAGATACCCACGACTTTCTG 23437 28 100.0 31 ............................ ATGAAGAACTGCTTTCCTTTGAAGAGAATGG 23378 28 100.0 32 ............................ TGATGATATCTGCCTGCTAACGGTTAACTACA 23318 28 100.0 32 ............................ ATCACGACAGTAACCGGTGAAAGGAATGTAGC 23258 28 100.0 33 ............................ AAGTCTACCGCGTCATATTTGCTTTCGTTATAA 23197 28 100.0 32 ............................ GTCGATTGAAATCGATTCACGAACTACGAACA 23137 28 100.0 32 ............................ TGCTTTGTGACCCCCTGATATCCTTCGTTCCG 23077 28 96.4 32 .C.......................... TCTAGTGATTGATGATTGTTTCCCCGAGTCTC 23017 28 75.0 0 ....................TAGCACC. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTTTTTGGGCGATTAAACACGAACAAGCTTTACAAGCGGCGGAGCTGTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAATTTTATCGGTCATATTTATTCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAACCCCCAAGATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGACCCCAAACACATATTGTTACTTGCAGTCGGGTTATGACTATTTTCTATTACCGACTTTGCCAGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGAAGCGCCCGCTGACTGACAAGATACAATTAACCCGTTAGAAATATTTGGGCGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATTTGAAAACAATTCTTCATTCAAAACGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAATGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAGTCCCTTTATTGGAATATCCCCATCGCGAACACCACTGTCATCATGTTGGGGACGGGGACCTCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGGGCACCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //