Array 1 182865-180398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVH010000002.1 Klebsiella pneumoniae strain k13 NODE_2_length_729193_cov_43.273294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182864 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182803 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182742 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182681 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182619 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182558 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182497 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182436 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182375 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182314 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182253 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182192 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182131 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 182070 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 182009 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181948 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181887 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181826 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181765 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181704 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181643 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181582 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181521 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181460 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181399 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 181338 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 181277 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 181216 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 181155 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 181094 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 181033 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180972 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180911 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180850 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180789 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180728 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180667 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180606 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180545 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180484 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180426 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5956-6958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVH010000041.1 Klebsiella pneumoniae strain k13 NODE_41_length_7413_cov_65.066566, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5956 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 6017 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 6078 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 6139 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6200 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 6261 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6322 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 6383 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6444 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6505 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6566 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6627 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6688 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 6748 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 6809 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 6870 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 6931 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //