Array 1 595648-598297 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAE01000026.1 Klebsiella pneumoniae strain JHTS004 tig00000038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 595648 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 595709 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 595770 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 595831 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 595893 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 595954 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 596015 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 596076 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 596137 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 596198 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 596259 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 596320 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 596381 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 596442 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 596503 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 596564 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 596625 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 596686 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 596747 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 596808 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 596869 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 596930 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 596991 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 597052 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 597113 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 597174 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 597235 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 597296 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 597357 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 597418 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 597479 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 597540 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 597601 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 597662 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 597723 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 597784 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 597845 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 597906 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 597967 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 598028 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 598089 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 598150 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 598211 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 598269 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //