Array 1 28373-29738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPJ010000032.1 Klebsiella pneumoniae strain CFSAN059631 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28373 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 28434 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 28495 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 28556 28 89.7 32 ..........-.TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 28616 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 28677 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 28738 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 28799 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 28860 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 28921 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 28982 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 29043 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 29104 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 29164 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 29224 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 29285 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [29296] 29347 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 29408 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29469 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 29530 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29591 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29651 28 96.6 32 ..........-.................. CACTACCAGATCCGAATGGACACCCGTAATGA 29711 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATGGGTCTTCCCCGATCATGGTGGGAAGGCTCAGAACGCCATATTCAGCTTTCCGTAGTGGAACATCACCCCCAGTTTAAAGCGCTCCCGGTTTCGGTATCCCCTGGCTTTTATCCTCAGCAGCCTG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201647-204296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYPJ010000006.1 Klebsiella pneumoniae strain CFSAN059631 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201647 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 201708 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 201769 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 201830 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 201892 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 201953 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 202014 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 202075 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 202136 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 202197 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 202258 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 202319 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 202380 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 202441 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 202502 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 202563 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 202624 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 202685 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 202746 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 202807 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 202868 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 202929 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 202990 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 203051 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 203112 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 203173 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 203234 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 203295 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 203356 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 203417 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 203478 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 203539 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 203600 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 203661 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 203722 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 203783 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 203844 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 203905 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 203966 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 204027 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 204088 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 204149 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 204210 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 204268 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //