Array 1 96331-93926 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVSX01000036.1 Klebsiella pneumoniae strain BOX-2 BOX2_S50_R1_(paired)_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96330 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 96269 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 96208 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 96147 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 96086 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 96025 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 95964 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 95903 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 95842 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 95781 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 95720 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 95659 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 95598 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 95537 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 95476 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 95415 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 95354 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 95293 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95232 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95171 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95110 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95049 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 94988 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 94927 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 94866 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 94805 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 94744 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 94683 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 94622 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 94561 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 94500 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94439 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94378 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94317 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94256 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94195 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94134 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94073 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94012 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 93954 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCAGCCAGCACCACGATTCTGGGAAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGACAGGCTTACCCGTATTGAGACGGTTGCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96581-96430 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVSX01000036.1 Klebsiella pneumoniae strain BOX-2 BOX2_S50_R1_(paired)_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96580 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 96519 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 96458 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCCTGGTCTGCTTGGTGATGATCCGTGGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTACAGAACGACTGAGGCGGCGTGTATTGCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCTTAACTCTATTGCCAATGGCGCAATTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGATGCGCGCTCTGCTGGCTATCGGTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATGCAGCAACCGGCAAATATATCGCCGGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCTGCCGCACGCCTGGGACGAGTCGAGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //