Array 1 3132683-3133789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015379.1 Hafnia alvei strain HUMV-5920 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3132683 28 100.0 32 ............................ CCGTCCGCTTGCTCGGCACCAGAGAGGAACAA 3132743 28 100.0 32 ............................ TGTGTGGGAGCCACCTGGATTGCCGGCGGTGT 3132803 28 100.0 31 ............................ AAAAAATTGATAATGGAATGAAGCGCGTCGT 3132862 28 100.0 32 ............................ AAGCAGCTGAGTAACGGGATGCAATCGCTTGG 3132922 28 100.0 32 ............................ TGCGTGACGTCTTCTGGCTTGTCTGATACCAC 3132982 28 100.0 32 ............................ ATGAAGCTGGGCGCTTTTGCTTTGTGCCGGGC 3133042 28 100.0 32 ............................ ACTAACGGGTATACGTTGCCATTCTTCATTCA 3133102 28 100.0 32 ............................ GTATCAGCTGGCAAGACAACGCTGATCTCTAT 3133162 28 100.0 32 ............................ ATTGCAACCTCATTAAAGAAAGAGGGCAAACA 3133222 28 100.0 32 ............................ GCTATCCGCCGGCGTTATCGCTGTCAGCTGAG 3133282 28 100.0 32 ............................ TTTTCCCCGCTGATGTCACTACGCTAAATCCA 3133342 28 100.0 32 ............................ TGATATGTGGAACGAACCAATCGGTTTCTTAG 3133402 28 100.0 32 ............................ AGAACATGGAATGAATGGACTTATGTTTATGA 3133462 28 100.0 32 ............................ ACACATACAGTTCATACCGGCCGCTTGTTTGC 3133522 28 100.0 32 ............................ ATAATCTAACCGTTTGAGGTTGCGAACCGATA 3133582 28 96.4 32 ...............C............ ATACGAAAAATCTCCAGATGCATCAGACTCCA 3133642 28 96.4 32 ............T............... TCGGCAGCATTTCAAAGATGGGGCTTAACGCA 3133702 28 100.0 32 ............................ TCTGACTGCGTGAGCAATGTAAACAACAGCTC 3133762 28 82.1 0 .....................CA.A.TC | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CATCTTCTGTCCCATTTTCACTATACTTATTTCAGCACTGCACCATTGTTGCAGTATTTGAATTAACTTTTGCAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAAGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGTGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTACGTACGGTTGCGCTTTTGCCTGATACCACCGACTTTAGGCGTCCGATTACCGATTGATTATGGATGTGGCTGTCATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGGCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACTAGCCACAGAATGAAATGTTGCTGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3195092-3195538 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015379.1 Hafnia alvei strain HUMV-5920 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3195092 28 100.0 32 ............................ TGTAGATAATATTGCCGCGACGCTTCCTTGCA 3195152 28 100.0 32 ............................ ATATAGATTTAGGCGTCAGCTTTGATAGATCG 3195212 28 100.0 32 ............................ CATGAGACATCTAGCATTCCCCCTCGATTTTC 3195272 28 100.0 32 ............................ GAGCAGATTGCGTGGATGAAACGTCAAAAGCC 3195332 28 100.0 32 ............................ TACTCAGCCTCGAGCGAACGCACACGGTACAC 3195392 28 100.0 32 ............................ TAACAGAGAAGAAAATCATCTCGGCTTTCGTT 3195452 28 100.0 32 ............................ ATTTATCATGTACTGCTGATACTGGTACACAA 3195512 27 89.3 0 ....................-.C.A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTCCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTAATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGTCAACCATTTTTTATCGCCTACCTATAACTCATTGATTTTATATAAGTGTTCATCTGGAGCATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AAACTAAACGGCATTACTGCATATTTTTCTATTAATACCCACCATCGTAAACGGCTTCTCTTCAAATAAAAGCAAACGCTTTCCTAATTTATAAATCCCCATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGGCGGGTTTTTCATTTTGTTAACAGCATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTTAACTACCATCTAATATTCTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAATTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAACTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //