Array 1 2671-4288 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRP01000065.1 Tetragenococcus halophilus strain YG2 sequence065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2671 28 96.4 35 .A.......................... TATCGTTGTACGATGATGCCTGTAATCACAGATGA 2734 28 96.4 33 .A.......................... TAAATTAAACGATGCTCAAGGAAGATTGGCAAG 2795 28 100.0 33 ............................ TATATAACATACACAGGCCCCAAGGAGCACAAA 2856 28 100.0 33 ............................ GACCAGCCAAAGCAATAAGTTCCTTTATTGTGG 2917 28 100.0 33 ............................ TCTGACTTCATGGAGGCGATGAGCTGGGCTTTA 2978 28 100.0 33 ............................ CCATACAGATTAGACTATATCTTCGCTATTTAA 3039 28 100.0 33 ............................ GAAGAAACGGCAGACAAGCGAAGCAAGATCAAA 3100 28 100.0 33 ............................ CTATTACTGCTATTGCTGCTAGATTGACTACTG 3161 28 100.0 33 ............................ AACAAAAAAATCGCACAATTCAAGATGACTTTA 3222 28 100.0 33 ............................ GAAGAACGAGACGAATGGTGTGCAGTGGGTATA 3283 28 100.0 33 ............................ CCAAGTAGGTAACGTTCTAAGTCATCGCCTACA 3344 28 100.0 33 ............................ CAAGTATAAAAATTCTTGCCGTCCTTATGCCAG 3405 28 100.0 33 ............................ AACCCTGATTCTACTTACACAGTCGGGAAGTTA 3466 28 100.0 33 ............................ AAGAGCCTTTATATAAGCTAACTCTTTCTGATA 3527 28 100.0 33 ............................ CAAAAAGGTGACGTTGTGCCTGCTGAATCCGTG 3588 28 100.0 34 ............................ TCGCAACAGGGCTAAGGAGCTATGCCTTGGTCTA 3650 28 100.0 33 ............................ GCTGATTGCTGAAGTCGTCCGATTTCTTTTTTC 3711 28 100.0 33 ............................ TTCCATTTCATCAATTAGTTGTTCTTTGGCTAA 3772 28 100.0 33 ............................ AATGTATAAGACCCGCTAGCATTTTGGTAGTCG 3833 28 100.0 33 ............................ GTTTACACTCCTACAAAGACTTAGGTTTATTAA 3894 28 100.0 33 ............................ TAGACGACAATGAAGCAATTTTAGCAGACGCTG 3955 28 100.0 33 ............................ TGATTAATCAAATCAATATCTCTGACGAAAATA 4016 28 100.0 34 ............................ TTCCACAGGGCTAAACCAAGTTTTTCGGAAAGCA 4078 28 100.0 33 ............................ TCTATTTCGACTAATAAAACTTTTTCTACCCAA 4139 28 100.0 33 ............................ CTTATGCTGTCTTTAATCAATCGGAGCAAGTCG 4200 28 100.0 33 ............................ TAGTTGGTCATAGCTACATAATGACGTTGTCCA 4261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 27 28 99.7 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : AAAAAACTTGGATTTGTTTCATTGCTGATAGTAAAAATAGACTAAATAATAGACACAAAAGCGCCAAAACGTTATTCAGAAATGATAGGTTTACCTACTAAAAAGATGACGCTTTTTTCCACTTCATTATAGTCGTTGTGTAAAATGATAATATCGTTTTTGCAGTTTTTTATTACCACTAGTCCTCATTATCCAACCATTTTTCTATTGATTCATCAGTTATATATTCCTTTAGTGACAATAATTCTTCATTCCTTACTATATTATTTTTTATTCTTTCCCTCTCTTGTTCTGACAAAGAAACATCAAATGGAATTTTCCCATCTGCAACAATACGTTTAAAATACATAGTTATTGCCGCTGTCGTTGTTAAACCTAGTTCATCTAAAATTTGGCCTACTTTATCAGTAACTTTTTTATCAATCTTAACCTGAACAGTTTTGTTATCTTTTACACTCATGATAAAACACCCCTATTAATAATATTATCATTTCATTTTA # Right flank : CAGTTAAAGATCCCTATAAAAACAGTATTTTTAATTCATTGCTTTTAAAAATTTATTCACTTTTGTCGATAATTGATATATGATTTTTGCATCTTCCAAAGCACGATGGGGTACGTAGTCATCAAAACCATAACTTATTAAAGCCGTTTTTAACTTATAATCAGTAAGCAACATTTTTTCTCGTTTAACATAACGAATTAGATCATGAGGTTTATTTGATAACTGGAATAGGTCAAAATCCTTCAAATACTTATTCAAAAAGCGAAGATCAAAATCAATACCATATCCAACTATAGGAAAATCTTCTATGAAATCAACAAACTCTACTAATGAATTCTTTAATGGTTGCCCGTTTTTGGCTAATAAATCTTGAGTAATACCAGTTAACTTAGTAATATCTGATGGTAATTCCTTATCATATTTAATTAATCGATGAAAATTTGTTAGTTCTCCTCCATCCATTTTGACCGCTCCGATTTCAATAATCTGATTATCATTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 8347-12352 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRP01000086.1 Tetragenococcus halophilus strain YG2 sequence086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8347 32 100.0 37 ................................ AAATCTACTTTTAACCCCGATTGTTCCATGGTTACCC 8416 32 100.0 35 ................................ TGTTACGCCCGGTTTATCAAAAACGTCTACTACAT 8483 32 100.0 35 ................................ TCCTCTCCCCTTTCTTTTGGTTAGCCTTTTAACCT 8550 32 100.0 34 ................................ TTAACAGATTAAAAACTGGAACTCAAATTAAACT 8616 32 100.0 35 ................................ AAGATTTGCAAAAAGAAATGATTGTAGGCGGAAGG 8683 32 100.0 36 ................................ CAAATTGCTGGACTTGATCCAACAAGTCGAATTATA 8751 32 100.0 35 ................................ TATATGTGCTTTGTGGGTCTGTTTGCGTTATCCCT 8818 32 100.0 36 ................................ TCGTCGTCATCATTTAGAATCATGACCAAGTGGATC 8886 32 100.0 36 ................................ CACTTTACGCAGACGGATTGATAACGTAGAGCAAAA 8954 32 100.0 37 ................................ AAATATCGGATGAGGTAGATAAAGCACTATCTTTTCT 9023 32 100.0 35 ................................ ATCTACACGGGACAACCCATTGTTTAAGTCCTTTT 9090 32 100.0 35 ................................ TATAACATCATATATACGGCCTTTATAATTTTCTC 9157 32 100.0 37 ................................ TCGATATGATTTAATGCGTTTCGGTAAGCAAAACGAT 9226 32 100.0 35 ................................ ATAGCATTAGAATGAAATATATCGCCTAGCGACTC 9293 32 100.0 34 ................................ TCATTAATGTAATTAATATACCTTGTTAAGTAAC 9359 32 100.0 35 ................................ TTTATCTTATAATTATATTATATACTATAAAGCAT 9426 32 100.0 39 ................................ TTACTATCTCACTATTACTAAGCAACTAAGGCTTAATCT 9497 32 100.0 35 ................................ TTACTGAGTCCCCTTTTTCAAACTCATTGTTGCGG 9564 32 100.0 36 ................................ TACAATATCTTTTGTAGGTTTTGGACGGTTAAGACT 9632 32 100.0 35 ................................ TTGCTCAACTGTGATAAACTGGTTATCCTTGTCTA 9699 32 100.0 34 ................................ TTGATTATCTAAGCCACTATAAGCTTTATAAACT 9765 32 100.0 36 ................................ ATCTAATGGAAAATACGAATAATAGTTTCTGCCCTC 9833 32 100.0 36 ................................ TATTGTTTTAAGACAAATGATTGTTAAATATTATAC 9901 32 100.0 34 ................................ TTATTCCTCCTAGTAATTTGTTGCATCTTGCCAG 9967 32 100.0 36 ................................ TTTTAACATTTAATTATCCTCCAATATTGTATATAA 10035 32 100.0 36 ................................ ATCGTATTGGTCGTTGTAAATCTTGACTAGATACAG 10103 32 100.0 35 ................................ TTATAGGTATTGATAAAGAATCTTTTGAAATTAAA 10170 32 100.0 35 ................................ TCTAATATAAGTTTTGCCATTTATTGTAATGTTGT 10237 32 100.0 34 ................................ AACGTAGCCTCACAGGAATAAAACGTAGCTTTAA 10303 32 100.0 34 ................................ AACGTAGCCTCACAGGAATAAAACGTAGCTTTAA 10369 32 100.0 35 ................................ ATCTATTAAAATTTTGTTGCTTGCTCCTCTTTTAC 10436 32 100.0 35 ................................ TTACTAAAGTCTGCAAAGGATTGGAAAGCCTTTAC 10503 32 100.0 36 ................................ AATTTCAGGTTGTCCAAAATCTTCGACTTGAAAGCC 10571 32 100.0 37 ................................ TTCCTTTGAAAGATTCGCCTTGATCCGGATGATACCA 10640 32 100.0 36 ................................ GTTAAAATCTTTGATCGTAAAAACTGATTATAAAAA 10708 32 100.0 36 ................................ GCCTTTTGCTAAAGTCGATAAATTTTTTGACCCTGA 10776 32 100.0 36 ................................ AGTATTATTGGAGAACTTCTTATAGTCCTCCATATC 10844 32 96.9 35 ...........T.................... TCTGTGGAAAATCGTCACTGTATCAGCAGGAGCTG 10911 32 100.0 34 ................................ CGCTAGATGAAGATGAAAAAAAGCAGGAAATTAT 10977 32 100.0 34 ................................ ACTATCTTTACCCCCTTCTATGCGTTCTTGTATA 11043 32 100.0 35 ................................ AGTTAAATCGATAGGTAATTACCATATCCAAACGG 11110 32 100.0 36 ................................ AGTACATCCTTTCTATAATGGCGTTTATAAAGATAC 11178 32 100.0 35 ................................ CCTTATCGTTCTGCAAACTGTTATCACTATTAGAA 11245 32 100.0 34 ................................ TTTTAAAAATTTTGAAGTAAGCAACCAAGAAACT 11311 32 100.0 35 ................................ TTCTAAGATTGGTCTTATCAAGTCCATGCGGTAAT 11378 32 100.0 35 ................................ TTCGAACATATCGATGTCGATCAGCACCACTTTGT 11445 32 100.0 35 ................................ GTATTTTAAACAGAGCAAAGCATATGGAAAGCTGT 11512 32 100.0 36 ................................ TGAACGTATAAGCTCCGCTTCGGTTTTGTTGTGTGC 11580 32 100.0 37 ................................ AATAGTTTTCATGGCGTCGTTTAGAGGCGCGCCGTAA 11649 32 100.0 37 ................................ CCTCTGTGTGCGATGTAGTGAACAGAAGCGCCAGAAC 11718 32 100.0 36 ................................ AAGACAAAAGAAGAAGCAAAAGAATACGTTAAGAGA 11786 32 100.0 36 ................................ ATCATCATCAATGGCTTTTTGCTCAAAAAGACAATC 11854 32 100.0 34 ................................ AAAATAACTCCGATAAATATAACGAAACAAACTT 11920 32 100.0 36 ................................ CCTGCTTTAATGGCTTGTTGAACAAAAGTATCGCAA 11988 32 100.0 36 ................................ TATTGACCCAAGAGAACACTATTTAAATATAAAAAT 12056 32 100.0 34 ................................ TGGTGGTTCTGGCGGTTCTGGTGGATCAGATGAC 12122 32 100.0 35 ................................ TTTTCTTGAGCAAGAAATGCGTAAACTTGAAGACG 12189 32 93.8 36 ......T............T............ GTTTAAAGCTTATGCTAGCCCGCCAAAAGTAGAAGA 12257 32 93.8 33 ......T............T............ TTTGGGTATCAAGGGAAACAAAATCTTATAAAG 12322 31 84.4 0 .........-C........T.A..T....... | ========== ====== ====== ====== ================================ ======================================= ================== 60 32 99.5 35 GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Left flank : CCAAAGCAATCCGAAATGATTTGCCAAGTTATCCGCCTTTTATGGCGTAGGGGAGAACACTTATGATGGTTTTAGTTACTTATGATGTGAATACAGAAACAAAACAAGGAAGAAAACGTTTGAAACATGTTGCTAATTTATGTGTTGATTATGGCCAAAGAGTTCAAAACTCTGTTTTTGAATGTTCAGTAGTACCAGCAGAGTTTGTGGAATTGAAAGGAAAATTGGCCAACGTAATCGATCCGGAATTGGACAGTATTCGATTTTATTTACTAGGAAAAAATTGGCAAAATAGAGTGGAACAAATGGGAAATAATGATAGCTATGACCCTGATGAAGATGTTTTATTGTTGTAATGTTCATCGCGAATCGAGGTTACTCATAAATTATTCAGTCGGTTCGCACAAAATTAGCGCTATTTAGTAGAAACTAGTTGTTTTATTCCATTTAATAAATCATTTTCTGAATTTAAATTAGTGTGAAACCGCGTTTTTCCTGCG # Right flank : TAGTATAATAAAGATTTTGGAGTGTTAGATAAATAAAAAATTGTAGGAAGTAATAAACGAACTTTTTGCACCATTTTATCATTCCTAGTATAATAACTATGTTTTGGACGAAAATTTTAAATTAACCAGAATACATAGAAGATAGGAGCAATTCATAATGACTAAGAATTTTTGGGCAGAATTACCGAAGCCCTTTTTTATTTTAGCGCCGATGGAAGATGTGACAGATGTCGCTTTTCGTCATGTGATAAAAGAAGCTGGTGCGCCGGATGTTTATTTTACTGAATTTACCAACTCGGATAGCTATTGTCACCCGGATGGTAGGCAAAGTGTCCAAGGTCGCCTGACTTTTACAGAAGATGAAAAACCGATTGTAGCACATATTTGGGGAGATAAACCTGAATATTTCCGTGAGATGAGTCTTGGTTTAACAGAAATGGGCTTTAGCGGCGTTGATATTAACATGGGGTGTCCGGTTCGTAATGTGGTAAGACGCGGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //