Array 1 344378-347121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036254.1 Xanthomonas oryzae strain BB156-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================== ================== 344378 31 100.0 34 ............................... GTCGCTGACCGTGGCCTACGCGGCGTGCACGTCT 344443 31 100.0 36 ............................... ACCACCACCGGATCAAGCGGCACGGTGCGCACCAGC 344510 31 100.0 38 ............................... ATCTACGTCAAAGGGCTGTTCGACTGCAAGCAATGGTC 344579 31 100.0 34 ............................... TGCGCATTGGCACTCATCATTTTCGGCATCATCG 344644 31 100.0 35 ............................... ATTTTTAAGTATCTCGACCGTTCGGCGCTTGCTAA 344710 31 100.0 35 ............................... GATTAAAGTGACCCCAACCATGGAGGCCGTCTACG 344776 31 100.0 35 ............................... AATGGGCGCGAGCGATGAAGATGTATACGGCTGCC 344842 31 100.0 34 ............................... TGGTGTGCGGTTCGGTTTGTATCACCACCAGCGC 344907 31 100.0 36 ............................... TAAAGATACGTAAGGCTGGCAATCAAGCTGGTAGGA 344974 31 100.0 35 ............................... ACGTGACCAGCATCAATCCACGGACCCAGTAAGGC 345040 31 100.0 35 ............................... TTTATTTCAGCCTTGAGATGACGACAACGGAGCTG 345106 31 100.0 34 ............................... AGTGACGGCCAAGTAATCGTCGCTGACGAACAGC 345171 31 100.0 34 ............................... ATCATAGACGCTGCGAGCAAGGACGGCGGTAGCG 345236 31 100.0 34 ............................... GGTCCTAAAGCTATTTGGACGACACCGGATCAGT 345301 31 100.0 33 ............................... GGCGCAGCAAACTCTGCCAACTGCGCAAGACGC 345365 31 100.0 35 ............................... ATCGAGCTATCATGCCCATCCTGCGGCCTAGATGG 345431 31 100.0 35 ............................... AGCGGCACGGCGTGCAGCAAGGGCGTCATCAGCCT 345497 31 100.0 34 ............................... ATAGAGGCATGGCTGCTGCGCACGCGCTCATCTC 345562 31 100.0 35 ............................... CCCCGTCAAGCTCTCCATTTGGCAAGAGCGCCACC 345628 31 100.0 34 ............................... ACGCGTCGCATCGCGTGGCGGAATATTCACGATC 345693 31 100.0 35 ............................... TGCTAGAGCCACACACTCTGCATTAAGGCAAGAAT 345759 31 100.0 35 ............................... TGCACTGTTGGTGCAATTTCCCGTGTACAGGGGTT 345825 31 100.0 34 ............................... ATGACCACCATGCGCCCGATGCGCAAGCTCTCGG 345890 31 100.0 34 ............................... CCATTATGTCAATAATGGGAATTGGTCTAGCTAT 345955 31 100.0 33 ............................... TTGTCACCGGGATATCCACCTCTGCCTTGACCT 346019 31 100.0 35 ............................... TCTCCGCAGCCTGGATGGCCGCTCTAGGGTTGCCA 346085 31 100.0 36 ............................... CCCCCAAAGACATATCAAAGTCGCATTGCCTATTAT 346152 31 100.0 34 ............................... TTGCCATCGGCTTTGAGAATGCCGGCATCCAGCC 346217 31 100.0 34 ............................... AATGGTTTGACGGCAGCGACCGGGTCCCATCGTC 346282 31 100.0 36 ............................... GTCTGATGGCACACGCACCTGAGTTATTTGCAAGCG 346349 31 100.0 35 ............................... AGCGCCGAGAGCAACGCTCCCGCCGCCGGCAGGGG 346415 31 100.0 51 ............................... AAGAGCTAAGAGTAAACGGGCTAAGAGTAAACGGGCTTCTTCCGGCGAACA 346497 31 100.0 35 ............................... GCGTCGACGTCCACATCAATCACGAAGAGTGCCGG 346563 31 100.0 35 ............................... ATGTATATGACAGCGTTCCGGTCGATGCTAGCGGC 346629 31 100.0 34 ............................... CCGGACTTCCAGGCACGCCTGCGCGATGCGATCG 346694 31 100.0 35 ............................... TGGCGATGGATGAAGATGGGTCTTGGTGGTGGCAC 346760 31 100.0 36 ............................... CTTGCCGGTGCGTGCGTCCTTGAATGTGCCGGTCGG 346827 31 100.0 34 ............................... ATCCTGCGTTTGCTCGGTGCGATTCGGCTCGAAG 346892 31 100.0 35 ............................... CCACATTCGGCGACCTAGGCCGCCACACATCTCGA 346958 31 100.0 36 ............................... TTGTGCATGAATTGCGGACTCCCGTCCCGCTGTGTA 347025 31 100.0 35 ............................... TCTCTGCGTGCGGTTAATACTTCCGGTAGGCTGTC 347091 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================================== ================== 42 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCAAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTCGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATCGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCTTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACCTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGATTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCGTAAATACGGAGTGCGGGCTCATAATCATCTAGGTCATGTTAACACATCCGAAGCCCATCAACGGTGAGCACAAAGCTGAGGAATCCAAGGAACATGACGTCCAGCTTCTCGAAGCGTGTGAAAATCCGGCGGTAGCCCTTCAGGCGACGGAACAGTCGCTCCACGTCGTTGCGTCGCTTGTACATTTCCCGGTCGTACTCCCAAGGGTCGACCCGATTGGACTTGGGTGGGACCACCGGCACGAAGCCAAGATCGAGCGCCAACTGGCGGGTTTCATTGCCTTCGTCAGCCCGATCCATCAGCAAATGAATCGGGCGCTCCACCGGCCCCAGGTGTTCAAGCAACGTGCGGCCTGCCGGTGCGTCATGTGCGTTGCCGGGCGTCAATCCGAACGTGATGGCTGTTCGAGCATCTGCGGCAACCAGATGAATCTTGGTGTTCCATCCACCGCGGGACTTGCCAATCGCTTGTGGGCCGTTTTTTTTAATGCGCCAGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //