Array 1 4073-3074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKXR010000156.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_89 NODE_389_length_9900_cov_101.413330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4072 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 4011 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 3950 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 3889 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 3828 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 3767 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 3706 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 3645 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [3592] 3591 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 3530 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 3469 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [3464] 3407 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [3401] 3344 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 3283 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 3223 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 3162 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 3101 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 118700-116050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKXR010000162.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_89 NODE_419_length_510441_cov_104.627258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118699 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 118638 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 118577 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 118516 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 118454 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 118393 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 118332 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 118271 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 118210 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 118149 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 118088 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 118027 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 117966 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 117905 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 117844 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 117783 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 117722 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 117661 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 117600 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 117539 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 117478 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 117417 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 117356 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 117295 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 117234 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 117173 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 117112 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 117051 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 116990 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 116929 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 116868 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 116807 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 116746 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 116685 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 116624 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 116563 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 116502 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 116441 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 116380 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 116319 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 116258 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 116197 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 116136 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 116078 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //