Array 1 64953-63947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMQ010000009.1 Escherichia coli strain UoL_105 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64952 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 64891 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 64830 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 64769 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 64708 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 64647 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 64586 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64525 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64464 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64403 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 64342 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 64281 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 64220 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 64158 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64097 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 64036 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63975 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81395-80451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMQ010000009.1 Escherichia coli strain UoL_105 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81394 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 81333 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 81272 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 81211 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 81150 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 81089 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 81028 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 80967 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 80906 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 80845 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 80784 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80723 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 80662 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80601 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80540 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 80479 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //