Array 1 236-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000103.1 Flavobacterium psychrophilum strain 97587 contig00103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 235 27 100.0 42 ........................... TTACTATTAATCGAGGTGCTTTTGCCGGTTGTTCTGGTTTAA 166 27 100.0 42 ........................... CTACTATTCGAGAGAATGCTTTTGCAAATTGTTCTGGTTTAA 97 27 100.0 42 ........................... CTTCTATTGGAGATTATGTTTTTGGAGGCTGTTCTGGTTTAA 28 27 92.6 0 ....T....................T. | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 98.2 42 CATCAGTTACAATTCCTAATTCTGTGA # Left flank : | # Right flank : AC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCAGTTACAATTCCTAATTCTGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000105.1 Flavobacterium psychrophilum strain 97587 contig00105, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 1 27 100.0 42 ........................... GATATTGAAAATGGTGCTTTTTTCAGTTGTTCTGGTTTAACA 70 27 100.0 42 ........................... ACTATTGGAGATGAGTCTTTTGCACGCTGTTCTGGTTTAACA 139 27 100.0 42 ........................... ACTATTGGAGATGAGGCTTTTGCAGATTGTTCTGGTTTAACA 208 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 100.0 42 TCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 11138-8280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000027.1 Flavobacterium psychrophilum strain 97587 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 11137 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT CT,T [11124,11130] 11058 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 10982 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 10906 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 10830 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 10754 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 10678 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 10602 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 10526 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 10450 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 10374 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 10299 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 10223 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 10147 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 10072 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 9996 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 9920 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 9844 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 9768 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 9693 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 9617 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 9541 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 9465 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 9389 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 9313 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 9237 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 9161 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 9084 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 9008 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 8932 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 8856 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 8780 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 8704 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 8628 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 8552 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 8476 46 100.0 30 .............................................. TTAATTCTGCGAATGGATTATGCCGAATTC 8400 46 100.0 29 .............................................. CATTGTCAAGTTTAGAAATTGACTACAGT 8325 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 38 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1390-1142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000053.1 Flavobacterium psychrophilum strain 97587 contig00053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1389 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 1320 41 100.0 28 ......................................... CCGCCAAAAGCACCTCGATTAATAGTAA 1251 41 100.0 28 ......................................... TCTGCAAAAACATAATCTCCAATAGTAG 1182 41 80.5 0 ................G..G..C.........TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TGTATAAAAGCATCCTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTATTTCTGGTATTTCCGCAACTCCAGTAAAACCAGCATTCCTAGCTACCTTAACAGTAAAAGGAGTTCTTGAAGAAGTAACGGTATATTTTATGCCGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAAT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000075.1 Flavobacterium psychrophilum strain 97587 contig00075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 2 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 71 41 100.0 28 ......................................... TTGAAAAAAGCCTCATCTCCAATAGAGG 140 41 95.1 28 ......................A.................G CCTCCAAAAACATAATTTCCAATAGAGG 209 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 278 41 78.0 0 .......G.....G..G.....C.........TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 92.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : GT # Right flank : TGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000077.1 Flavobacterium psychrophilum strain 97587 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1 42 97.6 27 .............T............................ GATATTGAAAATGGTGCTTTTTTCAGT 70 42 100.0 27 .......................................... ACTATTGGAGATCAGGCTTTTGCAGAT 139 42 100.0 27 .......................................... ACTATCGGAAAAGGGTCTTTTGCAGAG 208 42 92.9 27 .............T....A...................A... ACTATTAGAAGGGGTATTTTTGCAGGC 277 42 97.6 27 .............T............................ GATATTGAAAATGGTGCTTTTTTCAGT 346 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== =========================== ================== 6 42 98.0 27 TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : TGTTCTGGTTTAATATCAGTTACAATTCCTAATTCTGTGACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 323-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000086.1 Flavobacterium psychrophilum strain 97587 contig00086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 322 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 253 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 184 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 115 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 317-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDV010000089.1 Flavobacterium psychrophilum strain 97587 contig00089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 316 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 248 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 179 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 110 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 41 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : C # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //