Array 1 49877-47410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOFJ010000036.1 Klebsiella pneumoniae strain SCPM-O-B-7882 36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49876 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 49814 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 49753 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 49692 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 49631 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 49570 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 49509 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 49448 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 49387 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 49326 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 49265 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 49204 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 49143 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 49082 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 49021 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 48960 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 48899 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 48838 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 48777 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 48716 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 48655 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 48594 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 48533 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 48472 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 48411 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 48350 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 48289 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 48228 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 48167 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 48106 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 48045 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 47984 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 47923 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 47862 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 47801 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 47740 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 47679 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 47618 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 47557 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 47496 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 47438 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCTGA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1976-1278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOFJ010000070.1 Klebsiella pneumoniae strain SCPM-O-B-7882 70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1975 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1914 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1853 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 1792 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1731 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1671 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 1610 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [1599] 1548 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1487 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1427 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1366 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1305 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //