Array 1 4460996-4459384 **** Predicted by CRISPRDetect 2.4 *** >NC_006361.1 Nocardia farcinica IFM 10152, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4460995 29 100.0 32 ............................. AGGCTGCCGCAGGGCGAGGACATTCCCGTGGG 4460934 29 100.0 32 ............................. CTCTATCCAAAGGAGTCGGACATGATCCGCTA 4460873 29 100.0 32 ............................. CCAGCCACTCAGGCGCGGCGGTACACCGTGCG 4460812 29 100.0 32 ............................. TTGTAATGTCCGTCAAGCAGATCGAGCGCATG 4460751 29 100.0 33 ............................. GAGGCAGTGACGCGCACTCCCGAGAACCACCAA 4460689 29 100.0 32 ............................. GCGGCCCAACCGCACTGCTGCGCCTGCTCCCC 4460628 29 93.1 32 ..........................T.G GCTATTTAGTCGTACTACGAATCGGCCCGCGA 4460567 29 96.6 32 ............................G TCGGCTACCTCGTGCTCGCTCAGCCATTCTTC 4460506 29 100.0 32 ............................. GCCGCCCTCGCACACCTTCGGCTCCGACAGCT 4460445 29 100.0 32 ............................. CGGCTGTCGAACCTGGCTGCGTTGTGCCGTCC 4460384 29 100.0 32 ............................. GGCAGCCGTTCCCGCATCACCTCCACCAGCTC 4460323 29 100.0 32 ............................. CTTGAGGTCGGAAATTCCGCGGTCGCTTCCGC 4460262 29 100.0 32 ............................. CGACGAGGTGGTCGTGGGCCGGGTCCGCGCCC 4460201 29 100.0 32 ............................. AGCGCCGCCGAGACGGCTACGACCATCACGGT 4460140 29 93.1 32 ......T..A................... TTCTTGATCCGGTTCGCGACGGTGATGGGCGA 4460079 29 100.0 32 ............................. CGTTGCCGACCCAGCTGCTCATCCAGCCAGGC 4460018 29 100.0 32 ............................. GACAAGATCATCGCGATCAGCCCGCCGCCGAG 4459957 29 100.0 32 ............................. GGGGACGGCGACGAACGAGATGAACCACCCGA 4459896 29 96.6 32 ............................A CATCTATTTGGATCGAATCGTTTCGGCGGTAG 4459835 29 96.6 32 ..........................G.. AGCATGAACTTGCCCTGGGTGGCCGCGGTCTT 4459774 29 100.0 32 ............................. ACCGCTGACGGCCCTGACATCGGCGACAGCCC 4459713 29 96.6 32 ..............T.............. AGCGGGATCAACGGCGCGACTGCGGTGACCAG 4459652 29 93.1 32 ..............T.............G TACTGGGATGAGGTCCAGCGCCGCCAGGTCGA 4459591 29 96.6 31 ..............T.............. GCGAACGGGCGCCGCCGTCGTCGGGGAAGCG 4459531 28 93.1 32 ........-.....T.............. CCGGTACCGCCGCCGCCACCCCCGCCCCCGCC 4459471 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGATAG 4459410 27 86.2 0 .............--........A.T... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACACCCGCCTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCCTACGTGCGTCCAGGGGTGCATGTGGTGCACGTCCAGGACCGCGAGCGGGAACGAGTCCACGAGCGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCGCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAAGCTGTGCGGAGGCTCACGCGGGACAACGGAGATGTGATGTATCAGGAGGTGGATGGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCTGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTTCGAAAACGGCTGGGGTGGCCTGGATCACCTCGTCGGGGCCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4584534-4583792 **** Predicted by CRISPRDetect 2.4 *** >NC_006361.1 Nocardia farcinica IFM 10152, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 4584533 28 100.0 33 ............................ CTGCTGGCGTGGAACCAGGCGCGGGCAGGGCGC 4584472 28 100.0 33 ............................ CGGCTCAGGGGGTGGGTGGGTACTACGAGCGAG 4584411 28 100.0 33 ............................ CCAGGCGCGTAGGCAGGCACAGGGGATCGTGGT 4584350 28 100.0 33 ............................ CTCGCCGTGGCCATCCCGCCGTTCATCACCAGC 4584289 28 100.0 33 ............................ CTTTCCGCAGCTCTGCAGCGGTCCGCTCCCTGT 4584228 28 100.0 33 ............................ CCTGCAACGCGGCGGGGGCATCTTTCTCCGCTG 4584167 28 100.0 33 ............................ CCCGATCCGGTCGCCGACGAAGTAGTGGCCTTT 4584106 28 96.4 32 .......A.................... CCGGTGTTCAGCGGCCGGTTCGACCTCGCGGA 4584046 28 96.4 198 .....G...................... ATAGCTCTTTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACCGGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGACGCCGGCCGCCCGCCATTGCGG 4583820 28 71.4 0 ...G..TG.....CG.TC..A....... | G [4583793] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 10 28 96.4 51 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AATGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCCTGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATTATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGTTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAAGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCGTCCAGGTGGCCGAACGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGTGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5289651-5290410 **** Predicted by CRISPRDetect 2.4 *** >NC_006361.1 Nocardia farcinica IFM 10152, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5289651 29 89.7 32 AC..........................A CCTGCGGATCGACGTGCTGGGCATACCAGATA 5289712 29 93.1 32 AC........................... TCCCGGTGCGGTCGCGGATCTCGGCCACAATG 5289773 29 93.1 32 AC........................... GGATCACCTTCGGCTCTTCGGTCATGATCCAC 5289834 29 93.1 32 AC........................... GAGGAGGAGGGCGCCGGTGAATAACTGGGAAT 5289895 29 96.6 32 A............................ CTGGTACCACGGCGGCTACCCCGGATTGGCCC 5289956 29 96.6 32 A............................ CCGTGGTCGATCGCGTACTGCAACACCCGCCA 5290017 29 100.0 32 ............................. CCGATCAGGCCGAGCAGGCTCGCCGCGAGCAG 5290078 29 100.0 32 ............................. GCCGACCCGACCTGCGCCCAGTCCGGGGCGTC 5290139 29 96.6 32 ............................T CACCCCGGCGACCCCCGCAGCGACGCCCTCGG 5290200 29 100.0 32 ............................. ACGGCAATACGGCATTGCGGTATTGCTGATTT 5290261 29 93.1 32 ..............T.............T GACTGTTCAGCGATCAGGATGTGGAACCGATG 5290322 29 93.1 32 ..............T.............T TGGCTCTCGTGTCCTGCGTCGACGGCTACGAG 5290383 28 69.0 0 A...-.......A......AA....CTGG | ========== ====== ====== ====== ============================= ================================ ================== 13 29 93.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTTGCCCGCGTCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCAGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCCTGCCGGTCTTGTCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCCGTCGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGCGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCGTCGTGGTCGGCGAGCACGGCCCGGCCGCCGTCGAGGAGGCGTTCACTGACGCCGACCA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //