Array 1 2698-5311 **** Predicted by CRISPRDetect 2.4 *** >NZ_AARK02000069.1 Listeria monocytogenes FSL J1-175 cont3.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2698 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 2764 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 2830 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 2896 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 2962 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 3028 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 3094 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 3160 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 3227 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 3293 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 3359 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 3425 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 3491 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 3557 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 3623 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 3689 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 3755 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 3821 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 3887 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 3953 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 4019 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 4085 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 4151 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 4217 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 4283 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 4349 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 4415 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 4481 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 4547 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 4613 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 4679 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 4745 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 4811 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 4877 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 4943 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5009 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5075 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5141 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5207 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5273 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [5298,5304,5307] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //