Array 1 397683-398689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHCK010000001.1 Klebsiella pneumoniae strain 5012STDY7626439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 397683 28 100.0 33 ............................ CGATTAAACAACAACCAGACTTTGAAAAAATGT 397744 28 100.0 33 ............................ CAGCGATCCCCCCTGTGAAAAACCCGTCTTTGG 397805 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 397866 28 100.0 33 ............................ CAGCGTGACATTGAAGATATCAGTTTCGTCATG 397927 28 100.0 34 ............................ CACACAAAAATGTTACTCGTGACCGTTTTGTTCG 397989 28 100.0 34 ............................ CGAGGTTCGAAGGCTGGATAACCTGCCGCCGCTG 398051 28 100.0 33 ............................ TATGGAGTTGGTTTATACTGGCTGGGTCGATAA 398112 28 100.0 33 ............................ CCCAGATGCGGTTTTCGCCCGTTCGAATATGTT 398173 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 398235 28 96.4 33 ..............T............. TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 398296 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 398357 28 100.0 33 ............................ TTTGATGAGGAATATGTAGTTTTCCCTGGCGTG 398418 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 398479 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 398540 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 398601 28 96.4 33 ..............T............. TTCATCATGTGTGAGCGGATTTGGCTCTATCCT 398662 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 17 28 98.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 407443-408514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHCK010000001.1 Klebsiella pneumoniae strain 5012STDY7626439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 407443 28 100.0 33 ............................ CCACCGCCCCGGGCAACCGGGGCAACCTTAGAC 407504 28 100.0 33 ............................ TAAAGAATATGTGCCGCCCCTCTCACCCGAAGA 407565 28 100.0 33 ............................ TCAATTTACTCGAAGGTTAAGCGGGCGTAATAT 407626 28 100.0 33 ............................ GGTAGCGCTGTGCTCCTTCGGGAGCCGCACGGT 407687 28 100.0 33 ............................ CATCATCGGGCTTGAGTGGCAGCAGGTCGATAT 407748 28 100.0 33 ............................ CAGCAACCGTGAGCAGAAGTACAACATGCTGGC 407809 28 100.0 33 ............................ TACACCCGCCGTGGGAACGACCTGGACACCTAT 407870 28 100.0 33 ............................ TACACCCGCCGTGGGAACGACCTGGACACCTAT 407931 28 100.0 33 ............................ CACCAGGCAGGGCGGCGCGGATAGCGTCAGGGG 407992 28 100.0 33 ............................ CGTAACGGGGATAACGAATGCAAATCCTGGCGT 408053 28 100.0 33 ............................ TTATGGAGGCACTTGAGATGAGCAAAGAAAGAT 408114 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 408175 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 408236 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 408297 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 408358 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 408419 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 408488 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 18 28 99.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //