Array 1 19578-18831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXP010000002.1 Frischella sp. Ac48 Ac48_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19577 28 100.0 32 ............................ TAGCGCTGATAGTCTTTCTAAGTAGCTTGTTA 19517 28 100.0 32 ............................ TGACTTTGATTTGTATTTAATTGGTGAGTTTG 19457 28 100.0 32 ............................ TATTGCACTGTCAATCGGAGACCAAAAAGACC 19397 28 100.0 32 ............................ AGCGAGCTTACCTTCCATTTGGGCTTTAGTGA 19337 28 100.0 32 ............................ TGCATAAATTGCCGCTAAAGCACCAACGCCCG 19277 28 100.0 32 ............................ AAATGAAAGAATCTTTAGAAGAACTAAATCAA 19217 28 100.0 32 ............................ ATCGGTCGATTCGTACTTGACGTCGTCATTGC 19157 28 100.0 32 ............................ AAAACGGAAGTAACAACGGTGATATTGATAAA 19097 28 100.0 32 ............................ AATACTATCTATTTTATTGGGTGTAATGACGT 19037 28 100.0 32 ............................ CGGCGAGAATGAATATGGTAAAAAAATATTTC 18977 28 96.4 32 .................T.......... TTTCAAAAAAATTAAGTTTTTATTCTGATTTT 18917 28 100.0 32 ............................ GATGGCTTATCAGATGAGCAACTGTTAAAGGT 18857 27 89.3 0 ......................-..CC. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGTTTAGAAA # Left flank : ACTTAATATCATTCCCTGAAAAATGTTATGCAAATCCTTAGCCAGAATCGAATAAATATTAATAAATCAGGATTTTTTATCGTGCGCAACACAACGCGGTATTCCGAGAACTTGTTGGATTGCTTTAAAACCTTAGGATCGTCTAAGCATTGATAATAGCAATTTTGCCATTGCTTTAAAGTCAAAAAAGATAGCTTGCTAGTTGAGAGAATAATCTGTAAATAAACGCTAACTATAACGGCGAGTTAATAAAAAGATAACAAACGCGTTTCTTAAACAATTGAGGTTGTATCGGGTTTTGATATTACGGTAAGCAATATCTGACATCCAAGCTTATTAAATAAATCACCACAAAATGCAATTGCCAGACCCTTTTTTTTTAGTTAATTTAAAATATAAATATATTCAACAAGTTAAAAAGGCTCTAAAAAAAAGGGTTTTTTACTTCCAACTTCAAGTTTGCCTTTTTGTTAATAAGGTTTATAGTATGTTTGGTTCTA # Right flank : GACATGTTAGTCTTTACCCTGCCTAGCAGATTATTAAACCCAAAGGCTTTTTTAAATGTCTTTGGGTTATTTTGATGTTGGTAAAAATGAATTTTACTATTGTTTGAAGCCGTAATGCTTACTATTATTTTATTTAAAACAAATTTGTCTTATTCATTCTCTGTAAGTGTTTTTAAATATTGAAAAATTTGGCGCGCTGATTTTGGTGGTTTGTTGTCGTCGCGTTCTTTCTTAGCGGTTCTCGCTAATTGGCGTAATTGTTGGCGATCAGCTAAAGGATATAATGCCATAATTGGCTCAGCGTTACCACTTTCGATTAAATCATCTCGTAATTGTTCTAGTTTATGGAAAAGGGCATTTTGCTGATTATGGCGATTTTTTAATTTGTCCAATGCTTGGCTGATCGGCTCGATATTACGATTACGTAGCAATTTACCAATATACTGGATTTGGCGACGATAACCTTCTTTTTTAATTTTTTGTGCCAATTCAATGGCATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23899-23391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXP010000002.1 Frischella sp. Ac48 Ac48_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23898 28 100.0 32 ............................ TAACGGACTGACCGAAAAAGAAATATATCAAC 23838 28 100.0 32 ............................ TTAAGAAAAATGCTAAATCAACTGCTGATGCT 23778 28 100.0 32 ............................ GTCGCCAATTTTATATCAAATGGTAAAAACCC 23718 28 100.0 32 ............................ TAATTTTCGGAGGCGTTCGTGCTCCCGTAATT 23658 28 100.0 32 ............................ AAGCCGAGTATTTATGGGCTTTGGTGAAAATA 23598 28 100.0 32 ............................ TCACAATCTTCCCCTAGTGGCGCAAGGTCATT 23538 28 100.0 32 ............................ ACCCGCATTTAAATTCTAAAGGATCACTATCA 23478 28 100.0 32 ............................ AGACAAATTTTACAAGCTTACTTTCTTCTAAT 23418 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTTACTGCCGAGTAGGCAGTTTAGAAA # Left flank : AGACTAGTCGTAAGTGGACGGAGTAATGCTTGAAACTTTGGCTTTAATTGGTAAATAGATAACACAGCACATTCCTAATCATTTATTATCTTTGAATTGCCTTTACTGCGATTAATTAAAACGTAGAATTCGATGTATTATACAATGGTTTGTTATCGTGTATAGCTAAATTATAATAGCTTTTAATTATGGTGATTTTGGTGGACTAACTAAGCGCAATTCATAAATTATCGTTATCGATAATAAAATGAAATATTATGTGGTAATGACAATTTTATGCCAATATCTACCATTTTTATGATTAAATTCCTGTGTGAAGAATTTTCTTAGCTGTTCATAATTACATACCGCCAACCATACAATTACTAACCCCTTTTTTTTACCAAAATTAAAAAATAAATATAATCAACAAGTTAAAAAGCCGTTAAAAAAAAGGGTTTTAAACGCCTAAACTCCAGTTTGTCTTTTGCTAAACAGGGTTTATAGTATGTAGTGTTCTA # Right flank : TAGCACAAGGAAAGGTGATTTTTTAATCATCTCTTAATAAAAAAGGGCTCTATTGAACCCTTTTTTAAATTACGCTGACCTGATTGAATTCATTTTTTAAAACAATATTAATTCATATCACCAAGTTTTTAATAGGCCTTTAATGCGACATTGATGTAGAAACCCCACCTTCTGGTACAGCAACATAAGGTGTCTCTTTATCACTTCTTTCTTTGTTGTTGCGTACTTTAATCGCAGTTCGAATACCATAAAAAATAATACTATAAACAACAACTAAGAATAAAATACTTAAACCAGCATTTGTATAGTTATTGATGACGATTTGGTGCATATTATTAATTTGTTTTTCAGTTAAGCTTGGATTTTCAGCAATACGGCGATTATATTCTTTCGCTAAATATAGGAAGCCTTCTAATTGAGGATTATCGCTAAATAGTTTTAGACCAAGTGCCCAAGTGGTACAAATTAATAACCAAATAGCAGGGATAACGGTAACCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 29241-28615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXP010000002.1 Frischella sp. Ac48 Ac48_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29240 28 100.0 32 ............................ ACCGGGGTAGCCGCCATATCGCCAAGCCAAGA 29180 28 100.0 32 ............................ ATTCGTACGCGTTTTTAGCCTCGTCCAGAATA 29120 28 100.0 32 ............................ TTAAGCCCCCATCGAAAGCTGGGGGTTTGCTT 29060 28 100.0 32 ............................ TCAACACTGCCTTGCCATTTTTTTGCTGATGA 29000 28 100.0 32 ............................ TCTAAATCAGGATCGGGCTCATAACCGCCAGC 28940 28 100.0 32 ............................ AATATTGAAAATGGTATCTTTAACGGCAGTTA 28880 28 96.4 32 ...........T................ TCAATACTTTTGCCCATTTTGCGCAAAACAGG 28820 28 100.0 32 ............................ AATTGGAATTGTCCGGCTTGAGCTGCTTCTAT 28760 28 100.0 32 ............................ AGGAGTAAAAAATGGGTTCAAGAATAACAGGA 28700 28 100.0 30 ............................ AGACCAAGTAGCGGGGGTCTAGCGCGCTTC 28642 28 89.3 0 .....................AA.T... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGCATAGGCAGTTTAGAAA # Left flank : ATATTCATACCGAATATTCTTTTAAAATAGATTTACTCTGTAGTACTTGTGTGGGACAAAGGTGAAAATCATATTTTAAATTTTTGATATAAAAAATATTTCTATTGATAAGTTTTAGATTAATACCAATTAGTCACTAAACATGCCAAACCAAGCAATATTGTTAAACTATGCTTTAGCATATTATTTTTACTAAATTTTCACCCCTGCGCAGTAGAATCCGGATGCCAGATGATTTTGTTATAAACCTTCAGAGACTCTAATCATCAGTAGCAATGAAATTCACCATAATTTAAAAAGCGAAAAAAACAAGCACCACAAGTTAGTGAATAATCTATGTACATTAACTAAATTTAAAGATATCCCTAAACCCTTTTTTTTAACTAATTTTAAAAATTAGCATGATCAATGAGTTACAAAACCACTTAAAAAAAGGGTTTTAAAACCCAAAATTTCACTTTGCCCTTATGTTACCTAGGTTTATAGTATATAGCGTTCTT # Right flank : TTGCTGAAAGGTGGTTTTCGTCAATGTTATCTAAATAATCTAAAAGTCTAATTTTTATATTTATGACATATAGGTTGATTTTAATCACATAAATTAGCTTAAAGGTATTATACCAATGATTGATATACAACTAAGTAATATCGTTTGTATCACCAAGGTGATGATTTGTTTTTTTAATAATATTAAAGTACCCATTTGACGGTCGGTTATTGATCGTGATGGTTGTATTTTGGATTTGATTAATTTTAATTGTATTAAGGTATCATCTAACTCTTTTAGCGTATTGGGGAGTTGATCGAACTTGGTGGCTAAGTAGTCAAATAGTTTTTTATCAAATGCGATTCGTAAAGCGTAATATTTACTAAACAATCCAATTAAAAAACAAGCAACATAACCAACGATTAACATGGCAGAACTTGCCGACAAACTTGCGATTAAGGCAAATGATAATCCAATCATCGTGAACATTAGTGACATAATATCCAATTGCCGACTTATTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 219745-219950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXP010000009.1 Frischella sp. Ac48 Ac48_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 219745 28 100.0 32 ............................ TGCGATCTCATTACCAAAATCATCTACTTGCC 219805 28 100.0 32 ............................ AGAGCTTGCATAAATGCGTATTCAAACCCTAC 219865 28 100.0 29 ............................ CTAAAAAAATAAACACAGTGATGAGAATT 219922 28 78.6 0 ...T.....T.....AA.....A.T... | A [219944] ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 31 GCTCAATACCGTATAGGTAGTTTAGAAA # Left flank : AAGTGCGTTACAGCAACAGGCTGCCATTGCTGACTATGTATTGATTCTGCCAATCACAGCCATACCAGCTGAAGTTAAGGGCTATTTACGTTTTATTCGGGTTAATCCGAAAGGACAAAGTGCATTAAGACGTGCTGAAAAACGCTTAACCGCTCAGGGTAAATGGTCTAGCGATGTACAACAAAAAATGATAGAAAAATGGGGAAGCATTAATTTAACCTATCCTCATCTACATATAGATAGTCAAAGCACAGGTCAGCGATTTATTATGTGGTTAAAGCAAGAAAGCGTTACCGAGCCTGTAAAAGGTACATTTAATAGCTATGGACTCAGTAAAATAGCAACAGTCCCTTATTTTTAAATTACCAGACCCTTTTTTTGAGGTTGTTTTTAACCTATTGATATTTATTAAAATATCTAATATAGCGCAAAAAAGGGTCAAAATAAAAAAAAGTACTATAAGCTCTTTCACAATAAGGAAAACTAGCAAAAAAATTCTA # Right flank : AATCATATTATCCTGCGTAAAACACATTTTAGTTTTACTGTTTCATTTAGATTTAAAAGATCATTACTACAACAGAATTTAATGATATATTAAATCATACTAAGCAATGTTTTATTAGCTGTATCATTATGATTAATTTGAAAAAATAAGTAATTCGTTAAATTTATAATGTTAAGATTTAGTTGATGATTATTTTTAACTTTTAGCCGTATATGATAAAATTAATAAAAATTGGTTCGCCAATGGTCGTTTGTCATTAAACTATTAGGTACATTTTGAAAACATCAGATACTCCAGTTCAGCCATCAATGAAAAGAAATTTAACGTTTAAACTATTTGCTATCGACGTGTTATTATTTTTCACGATTCTTGGTGCGATTTATTTAATGTTGTCATTAATTTCGTTTTCGTCTGCTGATCCTGGCTGGTCTCAAACGGCTTGGTATGAGCCTATTCATAATTTAGGCGGCGAAGTCGGTGCTTATTTATCCGATGTTTTG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCAATACCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 226023-226591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXP010000009.1 Frischella sp. Ac48 Ac48_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 226023 28 100.0 32 ............................ TCTTGATATTATCGACCATCAGAATTATTACT 226083 28 100.0 32 ............................ TATTGCACTAGTTTTATTGATTGTAAATAAGT 226143 28 100.0 32 ............................ TTGTTGAAACTTCAATCAACAAACGATCGGGA 226203 28 100.0 32 ............................ AATGACGCCCGCACAGCTGCAAGAGTGGCAGG 226263 28 100.0 32 ............................ TGTGGAGTTATTTAATTCACCAAAATATTTTT 226323 28 100.0 32 ............................ GCGCCATTTAAAGCGGCTTGGAAATTAGTAAA 226383 28 100.0 32 ............................ ACCTCCAGATGAGTTCGATGAAGAACCGGACT 226443 28 100.0 32 ............................ ATGCTCCTTGTAGGTCGTTAGGCTTCATACCT 226503 28 100.0 32 ............................ TGCAACAGCCAAGCCAAAGCAACCACAAATGT 226563 28 89.3 0 ..........T..........A..A... | C [226583] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGTATAGGCAGTTTAGAAA # Left flank : ATAAAAATTGCTTTACTCAGCAGTCGATAAGCGGGAAAGCTAAACAGCATTACGTCAATAACGGATTAATAATTAAAAAAACGCCACAAAGCTATCCCAACCTCAGCCCTGCACTGCAGCCAGAGGGTTTTCGTTTAAAAACCTTCAGGTCGCTTGAGCATCAGTAGCTATATATTACACTGGTGCTTGAAACACCAAATGAATAGCATGATAAGTAAGAAAGTAATCTGTATATAATTCTAACAATAGCAGTAAATTAAAAAGATAAGAAACGGGTTTTTTAAACTATGGTGCGGTTTTGATATTACAAAATACAGAATCCGATCTCTTCTCTTATTAAAATAAAACATTTAAATACGCTATTGCCAGACCCTTTTTTTTAGCTAAATTTAAAAATAAATATAATCAATAAGTTAAAACGTCTCTAAAAAAAAGGGTTTTTGATTCCTAAATTTAAGTTTGCCCTTTTGCTAATAAGGTTTATAGTATGCTACGTTCTA # Right flank : ACCCAATATATATTGGTGTTTGTGTTGCTAATCAATTACAACTGCTTAACATTCTTAATATCACTCTAACAATGGTTATCCTTTACTTTATTGGGATAATCGTTGCACTTCCGTGAAAAAAGAGTATAATTCTGGGGCTTTTATTTCTGTTTTGTTAGTAATTTCATTGGCAAACGGCGATAAATTAAGCAAGAAACAATTTAATTTTAAGAGGAAGTTATGGTAACTATTCGTTTAGCTCGTGGCGGTTCTAAGAAACGTCCATTTTATCAAGTCGTTGTGACTGATAGCCGTAACCCACGTGATGGTCGTTTTATTGAGCGCGTAGGTTTCTTCAATCCAGTTGCTCAAGGTAACGCAGAAAAAGTACGTTTAGATCTTGATCGCGTAAATCACTGGGTAGGTTTAGGTGCTACTATGTCTGATCGTGTTCGTTCACTTGTCAAACAAGCGCAAAAAGCGGCTTAATCATTTGTGAATAGCTGTTTAGGTAATCCGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //