Array 1 29810-30258 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTFC01000010.1 Gilliamella sp. Pas-s95 NODE_10_length_76368_cov_288.265760, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29810 28 100.0 32 ............................ ATGCGATGTTTAACTAAAGCCATATCAATGTT 29870 28 100.0 32 ............................ GGCATAAAGCTGCTCCCATTCTTGCAGTTGGG 29930 28 100.0 32 ............................ CACCATTTATTAGTTTATTCTCTTGTAACGTT 29990 28 100.0 32 ............................ CGTAGCTTTTTGTATTTGCTGTGACTTTATCA 30050 28 100.0 32 ............................ TCGCGGCCAACACTGAATGTAACGGTTTGCGT 30110 28 100.0 32 ............................ GAATAGAAAACCTGTTTTAGAATAAGCCACAG 30170 28 100.0 32 ............................ TGCTGGCAATAAATATCGGGCTACATCTTCCG 30230 27 85.7 0 .........T..G.....-.....C... | AT [30254] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 CCTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : GTGGCCTGCGGCTGCCCTCCGCCGCCGCTCGGTCTTAACGCACCGTTTGTGGAAGCGCTCCCGGCGCACCACAAACTCGCCAAACGTCCTGTTTGGCGTGCTAACCTCGCTCTGTTGTCGGCACATTCTGACGCCGGAATAAGACAGACAGCATAATCTTAGGTGTTTTTTTTGTGAGTTGTTTTTGTATTAAAAAGCAATGTAATTTCATCCAAAAAGTGGTCAGAAAAGGTATTGATTTTATTGAAGTTTTTATTTTTCTGTTTTTAAGCTAAATCAATCACTTACACAACCTAAGCAAATCGCCGACATACAACAAATCAACAAAACCAAGAATAGCGCCCCAATAACAGCAAGTTAACCGCTCCAAACCCTTTTTTTAACGATAATTTAAAATTAAATAAAATCAATAAATTATAAAACACCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTTGTTTATCTTTATACAGCAAGATTTATCAAATCTTAAGCTCTA # Right flank : AATAAAATCAACGATATAACTATAAGAACATAATATCTTCCAAAAAAGGATGGTTATGTTATTTGTCCTATTCCGGCGTCAGAATGTGCCGACAACAGAGTGAGGTTAGCACGCCAAACAGGGATGTTTGGCGAGGCTATGCTTCGCCGGGAGCGAATCATAGCCGGTGCGTCAAGACCGAGCGGCGGCGTCGGGTAGCCGCAGGCCACATTCTGCAGCCAAAGCGTGGGTTGTTAGGGAATTCGCTTTAAATTCCCTAACTCGGACGTGGTCACTGTAACTATTTTATTCACCCAAGGTCAAAACGTCCGAAACCACCGCACCTAATTTATTCTATTCACCAAAACAAAAAGTCCTGATTTTCCGCCAAAAATCAGTCAGAAAAGGTATTGATTTTATTAAAGTTTTTTTTTGGGCTATTTTTTTACAAAAACCGCCTAATGAAAACACAACAACCCATCCCAAAAACGATGGTTATGTTATTTGCCCTATTCCGGCAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 42941-42732 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTFC01000021.1 Gilliamella sp. Pas-s95 NODE_21_length_43013_cov_356.617522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42940 28 100.0 32 ............................ AATGAGAAGTTTTGCTCCTGCCATTGATTGCA 42880 28 100.0 32 ............................ AAATATAATCAAATCTAAAAAAGCCGACATAG 42820 28 100.0 32 ............................ GTAAGAAGATAAGCAACGCAGGAACGGCTAGC 42760 27 89.3 0 ...........C.......-....A... | CT [42735] ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 CCTTAACGCCGTGTAGGCGGTTTAGAAA # Left flank : CAAAAAAAGGGTTTTCAAAACCAAAATTGTTGTTTATCTTTATACAGCAAGATTTATCAAATCTTAAGCTCT # Right flank : ATAAAATCAACGATATAATTATAAAGACACAACAATCCTTCCCAAAAACGATGGTTATGTTATTTGTCTTATTCCGGCGTCAGAATGTGCCGACAACAGAGCGAGGTTAGCACGCCAAACAGGGATGTTTGGCGAGGCTATGTTTCGCCGGGAGCGAATCATAGCCGGTGCGTCAAGACCGAGCGACGGCGGAGGGCAGCCGTAGGCCACATTCTGCAGCCAAAGCGCGGGATTGCTAAGGGAATTCGCTTTAATTCCCTTAGCTCGGACGTGGTCACAATAGCTATTTTGTCCACCCAAGGTCAAAACGTCCGAAACCTGCGCACCCAATTTATTCTATTTACCAACCCCAAAAAGCCTGATTTTCCGCCCAAAAATCAGTCAGAAAAGGTATTGATTTTATTAAAGTTTTTATTTGATGGTTTTTAGCTAAAAACCACCACCCAAACCCTTCCCCAAAACACACCAACGCAGGTTGACTCAAGCCTTAACAAAACCTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 12867-12660 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTFC01000031.1 Gilliamella sp. Pas-s95 NODE_31_length_31597_cov_294.032242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12866 28 100.0 32 ............................ ATTTATTGACGGCGCTAAAGCCGCTTGGGAAT 12806 28 100.0 32 ............................ CGTCAACCGCCTGAGCGCTGGTTTATGTTAGA 12746 28 100.0 32 ............................ AGATGAAGTTAATGCGATATTACAATTTTGCA 12686 27 75.0 0 ............A-...T.....TA.TT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : TAGGTGCTATATCATAGCTGATTTGTTGTTATTTTTCTATCTGCGGGCTTTTTTATTGCTTTATTTTGAATAAATCTAAGGTTAATAATTTCTTCCATTTTTCACATATCAAAAAAACATCGATCTGGTCGCGCTCCTTGATTCTATTGCTGATTGAAAGTTGTAGATGAACATCATCCAATATCTTTTAAGAAAGATAGAAAATAAGTTAATTGATATAGGCTATTTTTCTATTTATAGGTAGATAAAATTCGAAAACGCTTAACGCTGTTTTTAAGGTTTTTATTAAAAATCTAAGCAAATTGGTCTTTTGAGTTTTAGGTTTGGGTTGTACTACGTCATAATAAAGTCCAAAAACTAAAAACCAGAACCCTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAATGTCCTTCAAAAAAGGGTTTTTAAAACCTAAATAGCTATTTGCCTTTTTACATACAATATTGATAGTATATTAACTTCTA # Right flank : AATCACGAAACGGTATAGAATCCCGAATATTTTTTACAAAAAATATAGCTTAAAACGTGACAGTTGTATAAATACTTTATAATGAGCATACAACTTAGTAAAAAATTACGCGGTTTGTTTTTTTGTGTTGTATATGCAATGGGCATCATGTTAGTTAACGCTTAATTAGTTTTTTGGGTATTATCAATGGTTGGATGACTGACCATAATATGTTTAGCCAAATTAATGACGGTTATTTTTTCTAGGGTATTAACGCCATAGCACTTGTTGATGATATGGCGTTAATTTTATATATATTCATTACAGTCGTTTTTTAACTACTGTAACCGACGCGAGTGATTTCTACCATTAAATTAATAGGGTATTTTTAATATCTTCAATCGTTTTTGTGCCAGCTAGTTGCATGGTGATAGACAGCTCTTTGTTAAGATGATCAAAGACTGATTTTACTCCCTCAGCGCCACCTAAATTCAGACCATAAAGAATAGGGCGTCCAATAG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //