Array 1 392714-387733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJMM01000002.1 Peptoclostridium litorale DSM 5388 strain W6 CLIT_2c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 392713 31 100.0 35 ............................... TGAATATACGTCTGTGTTTGCTATTATCGGCTTTG 392647 31 100.0 35 ............................... TTTTTATATTTTATTGCATCCTCAATATCTGATTG 392581 31 100.0 35 ............................... AACCATGCTGCTAGTTGTGCATAGTCTTTACCGTG 392515 31 100.0 35 ............................... CCTCCTGAAAAACTAACAACATGTTTTGTATCCAG 392449 31 100.0 35 ............................... TAAATTCGAATCAGACAAAGGCAATTCAGCTGCAG 392383 31 100.0 36 ............................... AGAAACAAATTGTCATTTTCAAAAATCGTATCATCG 392316 31 100.0 36 ............................... AAAGGAATGATAACGGGAAATACTGTGCATGGCGGG 392249 31 100.0 35 ............................... ATACCTATTGTTTTTGTATCGGCGCAAAAGTTAAG 392183 31 100.0 35 ............................... AGGTTGGTCGTGATTATGAAGGGCTTCTTTTGTCG 392117 31 100.0 35 ............................... GAAGCTTAGATGTGATATCTGACATAAACGCATGG 392051 31 100.0 35 ............................... ACTTGAGGTTTCTCTTATATTGAAATCTTTGCACG 391985 31 100.0 34 ............................... AATATCATAATACACAATCATTTCTGAACCTTCG 391920 31 100.0 34 ............................... ACATCAATCGCTGGAACTGCAACAGATATATTTG 391855 31 100.0 34 ............................... AAGGAACGTGTCGCATATACTGTTTAAGTTTGAG 391790 31 100.0 34 ............................... ATGGAAGAGTTGGAGTTAAGATTAAATATTGATG 391725 31 100.0 34 ............................... ATGTTACTAAGCAGGTGAAAGTCTGTGCGGTGGG 391660 31 100.0 35 ............................... AGTACACCTAGATTAGTCTTGAATTGCTCTGCTAG 391594 31 100.0 35 ............................... GTCTCTAAGAGCTTCCTGTGAGGTCTGAGGGGTAG 391528 31 100.0 35 ............................... TCATCGTATAGGGAAAATTGATAACTCTCTATCGG 391462 31 100.0 37 ............................... GAGGCTAGTCCTATGATTATACTTAATTGCCAGCTAG 391394 31 100.0 36 ............................... ACCATAGACAGGGTTTTGCCCTCTCCAGGATTCGCG 391327 31 100.0 34 ............................... AATATTGCACTGATTTCAGCTTCTGACATACTAG 391262 31 100.0 41 ............................... CAGTATTAGTTCTTAGTTCCTGTATTAGACCCTGTTCCTGG 391190 31 100.0 35 ............................... AGAAAGGTTTTGGATGATGCAGCGAGGGAGAGTTG 391124 31 100.0 35 ............................... CAGTCTATCAAAGGCATGGAAACGATGGATATGAG 391058 31 100.0 35 ............................... CGGAGTATGATTACAAATATCTATACGAGATAATG 390992 31 100.0 34 ............................... ATCGCAAACGACAAGTAGCTTCTCCCGGTGGTTG 390927 31 100.0 34 ............................... TCGATAGGTCGGAGAGTATCCGTTCTCCTTCGAG 390862 31 100.0 36 ............................... CAGATGATTCACTCACTGAATTGAAGATGGCAGCAG 390795 31 100.0 35 ............................... TGAAAGATAAACAAGGGGACTTGGCAGCTCTCGCG 390729 31 100.0 35 ............................... TAAGCGCTACAGCATTGCTCATTATTCCCTTGTCG 390663 31 100.0 35 ............................... CCGTCTATCCATATTGTCTTGACCACTCTCGCCAG 390597 31 100.0 35 ............................... TTTAACAGCACACAGCCTTGAACATGTGCACTTGG 390531 31 100.0 35 ............................... CAGATATGTCTGACTATGTGACATTCGGGCAGAAG 390465 31 100.0 34 ............................... GAATGCTATCCAATTAAACAACGTGCTTGCTGAG 390400 31 100.0 35 ............................... ACATCGTCTAGGTCTTCCACGACAACCGGTGTAAG 390334 31 100.0 35 ............................... GTTGAGCATGGGAACTGATTCCCCAAGCTGAGCCG 390268 31 100.0 36 ............................... TTTTTGACTGCTGCTGTTCTTTTTCTGCTGGCCTGG 390201 31 100.0 36 ............................... TAAAATCTTTAAATCGGATTGTTTTTGCAGTCTTTG 390134 31 100.0 36 ............................... AAAAACTCGTTAGGGATTGCTGCTCCCTTGATTACG 390067 31 100.0 35 ............................... ACAGCTTGCAAAGCAGGATGGAATCGCCGGTTTTG 390001 31 100.0 35 ............................... GATTCCTGCGTATGGATCATCTTCGGTAGCACACG 389935 31 100.0 35 ............................... CCATAAGGGGTACTCAGCTTGAATTTGGGATCTGG 389869 31 100.0 35 ............................... TGTATTTTGTGTTAACTGTTGTTAACCTACTTACG 389803 31 100.0 35 ............................... TCATAGCGCTTGACTACACTACGGGCGTAATTAAG 389737 31 100.0 36 ............................... ATGAATTTGTAGGCGAATTTGGTGGAGAAATTGAGG 389670 31 100.0 34 ............................... CGCTACTGACTACGAAGTATACAAATCCAATACG 389605 31 100.0 35 ............................... CAGAGTGGTATTTGGCGCATTACAGAAGGATATAG 389539 31 100.0 36 ............................... GGAATTGGTTTTTCGTCTATTACAGTCCTTTTCAGG 389472 31 100.0 34 ............................... ACAGAAAAATTCAATAATCTCCTTGTTGGTTTTG 389407 31 100.0 35 ............................... CAATTCTATATAACTTTTGAAGAAGTTTCTTCCTG 389341 31 100.0 35 ............................... TTACGTCATCAGTAATCATATCAACGCCTTCGACG 389275 31 100.0 36 ............................... AAATAGAGCATACCCGTTGCATCGTATATTGCCTCG 389208 31 100.0 35 ............................... ATTACAACCACCCCAGATTGAGAAAATACAGCCCG 389142 31 100.0 34 ............................... CTAAAATGGTATATCATCGTCATCAAAATCTTTG 389077 31 100.0 35 ............................... TTATTTTAATTTGCGATACGCTCGGCGCAGTAGAG 389011 31 100.0 36 ............................... ACATTGTTCCCAACTAGGTATACATAGCATATAACG 388944 31 100.0 35 ............................... AGGCTCACACTTTCAACTTCTTCCACCTGTATGCG 388878 31 100.0 34 ............................... TTTTCTCCCATTGCGGTAGCTTCCTCCCATTTAG 388813 31 100.0 35 ............................... GTTATCAACGTGTTGATTTTCGCGCCGGACGGAGG 388747 31 100.0 36 ............................... CCGAGTATCGGCTTTTGGCGACAATGCAAATTGTTG 388680 31 100.0 35 ............................... TATCTTGTAGTTCTTCAATTGTAGGTGGTGGAGTG 388614 31 100.0 35 ............................... AGATGTAAATGCTGGTTTAGGTCAAACTGTAGTAG 388548 31 100.0 34 ............................... AAGCCGAGTTTAGTGCTTGTCACAATGGCTAATG 388483 31 100.0 35 ............................... ATAGATGTTTCGGCAGCACCAGAGGGTGACTTTGG 388417 31 100.0 33 ............................... CCCTCCGGCTTCTCCGATTACCTATATTGTACG 388353 31 100.0 35 ............................... TTTGCTATCTGTCCTAAATTCAAGTCTTTTGGTTG 388287 31 100.0 35 ............................... TTAAATTTGTTGCAGTCAACTGACGCATTATTGAG 388221 31 100.0 35 ............................... AGCGACTTATACACTTGCCGAGGATGGATTGAGTG 388155 31 100.0 34 ............................... GCCGCAATGTCAGCCCATGCAAGGCTCTGCCTTG 388090 31 100.0 34 ............................... ATCCCTCCTGTCTGGTACCGACATTAATGTCGGG 388025 31 100.0 34 ............................... AATTAATATGTCTGGATTAAATCTGTGGTTTGGG 387960 31 100.0 35 ............................... CGTACCAATAGGTAACTTGAATAAAAATCGAAAGG 387894 31 100.0 34 ............................... TATTTCTAAATAATTTTCTATGCTCTCCCTGTCG 387829 31 100.0 35 ............................... ACATCTGGAACTGCAACAGATATATTTTGCAAACG 387763 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================= ================== 76 31 100.0 35 TCGCACCCCATACGGGTGCGTGGATTGAAAC # Left flank : CCATTTTTATGCAGATAGAAAGGAGCAGATATTATGTTGGTGCTGATTACTTACGATGTTAGAACTCAAAGTGCAGCGGGACAGAAAAGGCTGAGAAATATAGCAAAGCAGTGTAAGAACTATGGTCAAAGAGTCCAAAATTCAGTGTTTGAATGCTTGGTGGACCCAGTGCAGTTTGCAGAACTTAGAAATAAGTTGGAAAACATAATGGACAAGGAAAAAGATAGCATTAGATACTACTACTTGGGTAAAAATTGGAAGAATAGAGTTGAGCACGTAGGAGCAAAAGAGGGATATGATCCAGAAGGTTTTTTGATGCTTTAGGCTAGCTGCGAATATAAAGCACACATTTAAACAGAGGGGCATTCGCAGAAAGTGCATATGGCTTATGCTTGGTGAAACAACGAGTTTTTATAATTGAATAATATAATACAGAAAATAGAGGTTCGCGAAAATGGTTTGTAAAACCATTGTAAAATCAATGTTTTTTAGAGGAACTG # Right flank : TGATATACTTCCGAGTATCGGAAATACATATCTTGGAGATGTATTAATACGCAAGTTTTATAATGAGAAAAACACCTTGAAATATAATTAGGCAGATGTTAATATATACATTGTACAAATCAATATCAGGCGATGGAGCTCGCCTTCAAACATTGCTGTTGCAATTGATGGCTCCTGCTGGCCTTAGGCTCTGCAGGAGTTTTTTGCGTTTAAGGGAAAGGTTGGGCAAAATATACACATGGAGGTAGAAAAATGATAACAAGCGTTGGAATAATACTTGCAGTTGGAATTTTGGCGGGAATGGCATTTGAAAAACTAAGACTTCCTGGACTTTTGGGAATGCTTATAACCGGGGTTGTGATAGGCCCGTATGGAATGGATATCATAAGTCCGGATCTTCTGGGCATATCTTCGGATATAAGAAAAATAGCACTTGTTGTGATACTCCTGAGGGCAGGGCTTGGGATAAGAAGGGACACCCTTGCAAGGGTCGGGGTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 495858-488889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJMM01000010.1 Peptoclostridium litorale DSM 5388 strain W6 CLIT_10c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 495857 30 100.0 36 .............................. GTAGGTGCCACGAATAAGCTTGTAAACCTGATTAGC 495791 30 100.0 34 .............................. TTCCCCCTATCTAACTGCTACACCCGAGTGTAAT 495727 30 100.0 36 .............................. CCTCTTCCAGAAAACTCATCTGCTGCTCGTTGCCGC 495661 30 100.0 36 .............................. TAGAATACTGTGTAGAATAAAGTTTTTTATTCTACG 495595 30 100.0 37 .............................. ATATTTTAATTTTAATATCAGAAAGCCAAGTGTCAAC 495528 30 100.0 37 .............................. CCTTAACCCCATCTCTAACCACGTATGCTACCCCTGG 495461 30 100.0 36 .............................. TATCAACCCTACCATACCGTTGACATGTCCCGACAA 495395 30 100.0 36 .............................. CTTTTCTTTATATTTATACTTACATTTTACAATTAT 495329 30 100.0 35 .............................. TGTCAATATCGAAGCATACCCTACTACCATATTTT 495264 30 100.0 35 .............................. TTTCATTTAATATCTCTCCTTTAATTATCTCATTT 495199 30 100.0 37 .............................. CAGGAATTAATTAAAGATATTGATGATATTGTTGCTA 495132 30 100.0 36 .............................. GGAATCTAACAGCCTTAACATAATCATTCATTTCCA 495066 30 100.0 36 .............................. CAAACATCACAAATTCATCTTGTGATTCTATGTCAT 495000 30 100.0 36 .............................. GTCTGAATGATTAGGAGTTTTCGAAAAAATATTTGA 494934 30 100.0 36 .............................. GTGTAATCCGCTGGTGTATCAGTAAGGTCCTTAAAT 494868 30 100.0 35 .............................. TTAGCATACGAGCTTGCTACGAGCTTTATGAGTTC 494803 30 100.0 36 .............................. GTCGGTTGATATGCTGGGCAACGGTACAATCCCATA 494737 30 100.0 36 .............................. GAGATAGATTTGGTAGGCTTATACGAGCTTACAAGC 494671 30 100.0 35 .............................. GATCAACCATGTAAGTGTAAACTATTTCCTCATTG 494606 30 100.0 35 .............................. GCTGCAACGGTCAATAGTCTAGAGAGCGTGAGTAT 494541 30 100.0 36 .............................. TTCGACATAGAACTGATGATTAGAAAAAGTACCGTT 494475 30 100.0 35 .............................. ATATATGGTATAGGTATCAAAATAAGGGTATAATA 494410 30 100.0 37 .............................. TGAAATGTCAACTGCAATATCACCTGTCATAGATGCA 494343 30 100.0 37 .............................. TGGAATAGAAAATACAGCTGGAAGAATGGCAATGAAA 494276 30 100.0 37 .............................. TTTAGAGTGATAGTTACCGATACGTCGATCAATATGC 494209 30 100.0 35 .............................. GTATATATTCTGCTTGTATTTGTCTAACGTCGCAA 494144 30 100.0 37 .............................. GTGATTTTTTCAGGGACAAAAAGAAGAATAAGTATAT 494077 30 100.0 36 .............................. GATTATATTAAGCTGATGAACGGATCAGGAAGTATC 494011 30 100.0 37 .............................. GAGATTGTATAATAGGAGCCATAAAATTTTTCCCTGT 493944 30 100.0 37 .............................. TTTCTCAAGCTTCCTTACAAGTTTCACAAGTGGCTTT 493877 30 100.0 37 .............................. GTTATATTAGCGCAGTTGCTAAGGCTGAGATAGTACG 493810 30 100.0 35 .............................. CGTATTAGATAATGTATTTGATTAGCATGATACAA 493745 30 100.0 35 .............................. AATAAATTTTTTGAGTGAAATTGATTCGCTAACGT 493680 30 100.0 37 .............................. CGCTGAAAACCATGTAATCATTCCATATGTAATTCCA 493613 30 100.0 35 .............................. GGTGACGGAACTTCCGGGGTTGGTGATTCCCCAGA 493548 30 100.0 37 .............................. GCACCGCCAACTCAGGCAAAACCGCAGCCTCAAGAGG 493481 30 100.0 36 .............................. AGGTCCTTAACTATTTTCTGTATGGAACGATGCTTA 493415 30 100.0 35 .............................. TTCAGTATGAGGGCCCGTTATCACGGACCCTTCAG 493350 30 100.0 38 .............................. ATGAATCGAATCGCATTTGTTAGCGATTCAAGTTGCTT 493282 30 100.0 35 .............................. TTTCACTATAATTGATTACAAATATATTATACGCA 493217 30 100.0 36 .............................. TTCTAACCGTTTATGAAGTTCATCATTTTCCCTCTT 493151 30 100.0 36 .............................. CTAATATATTTCATTACATCATGCCTCCTTCTTCTG 493085 30 100.0 36 .............................. AGTCGTTCCCCCATCATCCGATATCGCCACTTCTGC 493019 30 100.0 36 .............................. GAATATATTAAGCTGATGAACGGATCAGGAAGTATC 492953 30 100.0 37 .............................. ATAGATTTAAAAAAATCTTCATCAAACGATGTACTAC 492886 30 100.0 36 .............................. ATGGATTTTTCAACCCTAACAAGCAAGTAAAAACAT 492820 30 100.0 35 .............................. AGAAGATAAAATCATAGAAATGGCAAAGGAAACAG 492755 30 100.0 36 .............................. GTTGAATTATTACGCAACCACGTTACTTGTGTAATC 492689 30 100.0 36 .............................. ATGGGTCTATATAGGCAACCTTAAGTCCTTTGCCAT 492623 30 100.0 35 .............................. TGAAATCTGTTGCATTCTGTCCGAATAAGTCTCTT 492558 30 100.0 35 .............................. CTGAAAGACAGGGTGCAAGTTATGGATTTGATAGA 492493 30 100.0 37 .............................. TGCCTGTATTAGAAAGGTCTATTGCAAGGACTTCTTG 492426 30 100.0 36 .............................. TTTGGTGGGGAGTTGCGATGTTGCCATTATAAAAAT 492360 30 100.0 35 .............................. TGTAGAAGCAGATAAGATATACTACGGGCTTGGAA 492295 30 100.0 35 .............................. CTTGAAGAAATCACTTACGAAAGAAGCAAAAAGCG 492230 30 100.0 37 .............................. GAGTTTTATAAAAAACTGCTTGTATCCTTGCTTTACA 492163 30 100.0 38 .............................. ATTGCTTTTTTTAGCTCGAGTTGAAGTCTCGCGTTCAT 492095 30 100.0 36 .............................. GTTTTTGTACCTCAAGCACTTCCAGCGACAAGTCAA 492029 30 100.0 37 .............................. AGATGTTCAATTGTTCCAGCTTCATCCGGCACAACAA 491962 30 100.0 35 .............................. GAGCCTGACTTTTCAAGTCATTACTCACAAGCCAA 491897 30 100.0 36 .............................. TAGGGTATAAAAACTATCAAAAGCAAGTAATTTTAC 491831 30 100.0 36 .............................. GCCTATGTTCCTATTCTTCTAATTTGTGATAATATT 491765 30 100.0 36 .............................. GTACTCATGTCTATAAAAGCAAGATCAATTTTTTTC 491699 30 100.0 36 .............................. TTCCATCTGCTGAACTTTACCCTGGTCTGTTTCCGC 491633 30 96.7 37 ...................A.......... GACAAAGTATACAAGATCAACACAAAGGTGGATTCGC 491566 30 100.0 36 .............................. TTTTCTGCACTGTGTAAGTTGTGTAAGAAGTGTTTT 491500 30 100.0 36 .............................. TTTCCTACGCTCTCCCTCTTGCTTAATAACTGTAAG 491434 30 100.0 36 .............................. GTTGGGGAGACAAGGATCAATGGGGGACTGCTCAAG 491368 30 100.0 36 .............................. TGTAAGTTTTCCATGTGGATTCTCTTGAATACCCAA 491302 30 100.0 36 .............................. CACTTATCCATCTACCGTTGCTGTAGAAAAATCCAT 491236 30 100.0 36 .............................. TTTGTAATTACAGATACAAACATAAGGGAAGAAAAT 491170 30 100.0 37 .............................. GAACTAGTAACTTCATGTACATTCACAACATTACCCA 491103 30 100.0 36 .............................. ACTGAATTAAAGAAGTGGTGCGAACTGATAGCCCAC 491037 30 100.0 37 .............................. TGCACATAAGTCATGCGCTCAATAAGCTTTGGTTTCT 490970 30 100.0 38 .............................. ATGCCTTGTAATTTTGTAATAAGATAATCTTTATTTAC 490902 30 100.0 37 .............................. AGCAGATTGTTATATACTCTCTCACTTTTAATTCTTT 490835 30 100.0 37 .............................. GTTTAAAATATGGTTCAACTATCACAGTACCATTTTC 490768 30 100.0 36 .............................. AAAGCTAATAGAGTTAACTCAAGATTATCACGAATA 490702 30 100.0 35 .............................. GTAGCATAGCCACTCGGCATCCCTCTATCCTTGTC 490637 30 100.0 37 .............................. TACTTTGACAGGAAACCTCGTTGTAAAAGGAAACACC 490570 30 100.0 37 .............................. CAAGAATGCGGCCGCAGGATACAGGGAGCTTGTCAAC 490503 30 100.0 35 .............................. CTAAATAGACCGTCTGTGACGCTGGATGAAAAATC 490438 30 100.0 35 .............................. AAAACTAATGGACGTTATAACATGCAGCCGATAAC 490373 30 100.0 36 .............................. ATACTCAAACCTGCCACCATTTATGCACATATCAGT 490307 30 100.0 35 .............................. GTATATCTTGAAGCTGGAACATATGAGATAACATC 490242 30 100.0 37 .............................. GATGCTTACACCGATAAAGTTATAGCTAGATCTGATC 490175 30 100.0 37 .............................. TGTAGCAACAGGTACTTTCGATACTTCTGTTATGAAA 490108 30 100.0 36 .............................. GTTATCAATGTGATATAAGGCCACTTGAAATGCCTA 490042 30 100.0 35 .............................. GAGGCTGCAGCAAGGTCCATTACCCCGCTTAAACC 489977 30 100.0 37 .............................. CCTCATGACTATCAGACAAATTTGTCTCATGCTTCTT 489910 30 100.0 37 .............................. TAGAACGTTTTCACCATTTCTAATTTCGAAATCCATT 489843 30 100.0 36 .............................. TTTAATTGAATTGTCACTAATCATAGTCGTAAAAGT 489777 30 100.0 35 .............................. TTCTCCTGTTCTCTCCAACTACTATTATACCCTTT 489712 30 100.0 36 .............................. TGTACCATCAAACCCTGCACCGTAAAGCTCAATCTC 489646 30 100.0 36 .............................. ACAAGAAATTTCCACGATAACAGGGACGGGATTACT 489580 30 100.0 37 .............................. CATTTAGGGTTACAACTGTTTCTTCATTTTGGAGAAG 489513 30 100.0 36 .............................. TGTTCCGACCGCTTCGGAATGTAAGGCACAAGTATT 489447 30 100.0 37 .............................. ATATCTTTGCAGAAGTCATTGAAGCTGTCTGCCCTGC 489380 30 100.0 36 .............................. TGATAAGCGTTCTTTGGTTGTGGAGTTCAATCCCAA 489314 30 100.0 36 .............................. GCATTTTAAGGAAGGCCAGCATATCAATAACGCTGG 489248 30 100.0 36 .............................. ATTTTTTTCATAGCTTCACACCTGTGTTGGCCATCA 489182 30 100.0 36 .............................. TCAAATCTCTCAAACAATAAAATACATATTTAGATT 489116 30 100.0 37 .............................. TATTTTGAGCCGAGCCATCGGACTCTTCAAGGGCTTT 489049 30 100.0 35 .............................. TAACAAGGGCGATGGCAACCCACACGCTCACATAA 488984 30 100.0 36 .............................. GCATTTTAAGGAAGGCCAGCATATCAATAACGCTGG 488918 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 106 30 100.0 36 ATTGAAATCTAACCATATTGGAATGTAAAT # Left flank : TGGAGAAAAAGAATATAAAGCATTTAGGATTTGGTGGTGATACAATGTATGTTATATTAGTATATGACATAAAGTTAGATGAAAAAGGCAAGCGTGTATTACCTAAAGTATATAAAATATGCAAAAAATATTTAATTCATATACAAAATTCTGTTTTCGAAGGCGAATTATCCAAATCTCAAATATTTCAATTAAAGAGAGAATTAAGTGTACACACAAGAGATGATTTGGATTCAATCATTGTATTTAGTAGCAGAGAAAAGAGATGGCTAGATAAAGAATTTTGGGCATTAAAAGATGATGCGACATCTAATTTTTTATAATTGTCGATGTGCTATGGTGAGAATAAGCCAGGACATCGACAATATAAGTAATACCAAACATTACATAGAAAAATTATTTTACAAAAAGAGGGTAATAGATATAAAACAATCAATAAAACTGAGGTCGACAAATCATATGTATCAAACCATTGAATTTACTAGTATAGATCACTACGG # Right flank : ATTTTTTTCATAGCTTCACACCTGTGTTGTGTTTTGCAATAAATAAATACACAAAAGTGAAAAAAATAAATGCAACATCCATGTTTACAAAAATTCAATTAATTGGTTTTCATGAGCGAGTGTTCAATCCTAAAGCTTGGCCCATTAAATACCAGTAAATGACTATGATGAACCATCCTGTCTATTATTGCATTTGTAAGCTTTTCGTCGTAAAATATGCCATTCCATTTACTAAATTCCAAATTTGTAGTTATTATCAGGCTCTTCTTTTCGTAAAAATCAGAAATAACTTGATAAAGCAATTTTGCTCCTTCTACATCTATGGGAATATACCCCCATTCATCACAGATAAGTAAATCTATCTTTTCAAACTGATTAAGCAGCTTTTTCAGAGTTCCCGTTGCTTTCGCATCTATTAGATCATTTACCAATGCAGCCGTTCTATAAAACCTAGCTCTTTTAGCATTGTTACAAGCTGCTACCCCAATTGCTGTCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //