Array 1 31721-31520 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHXLZ010000014.1 Helicobacter pylori strain SHZY43 contig_14, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	========================	====================================	==================
     31720	    24	 100.0	    36	........................	GTGTCGTTATTAAAGTTTAAACCTGTATTGTCAGTA	
     31660	    24	 100.0	    33	........................	TTGCTGTTATTAAAAGTGGATTGAGCGCTACTA   	
     31603	    24	  95.8	    36	...T....................	GCACTGTTGTTGAAGTTTAAGTTAGCGCTGTTAGTG	
     31543	    24	  87.5	     0	..TT...................G	|                                   	
==========	======	======	======	========================	====================================	==================
         4	    24	  95.8	    35	AAGCTATAAGTCCCTTGATTGAAA	                                    	       

# Left flank :   AACTTTGAGCGTCTTTTTTGATAGTGGTGTTTTGATTGTTGGTGTAATTTGTATCACTGCTTGCGATCTTATTATCACTAGTAGCGTTATTTAAAGTGCTTTGGGAATTACTCAAGTCTTGTTGGTAGGTTGCTTGGGCTTTGGCTTGTAAATCGTCCCCTAAAAATTGGGTGGTAATGGACTGATTGTTAAAGGTTTCTTGTAAGGTTTCATCTTGCCCGTTAATGTCAAAGGTTACATCATAAGTGTTACTACCCACTTCAACATGGCTTATGGCTTTATCGCCCTTATAGTTGATCAAATCCCATAAATAGCTTTGATAAACCCCATATTGGATGGCTTTGTTTGTGGTGAGAATGTCATAGGTTTGATTGCTATTAAGGGTTTGATTGAGGTTAAAAATCGCGCCAGAACCAAAGGATACACTGCCTTTAAGGCTAGCAAAAGGCGAACTTGAGTTTAAAGTGTTAGCGCCTAAAAAACTCACCTTGCTTACATTA
# Right flank :  TTCGTTTTATTAAAAGAGAGATTGCTGTTAGTCCCATTCCCGCTGAAACTAAAGCCCCCATTGGTGCCATCTGTAAAGATAGAAGCACTCACATTGATGTTAGAACCACTGAAATTCATGTAAGAGTGCTGTGTTCCTGCATCGCTATTATCAAAGCTGGCTTGATTGATAATGATATGGTTAGTCGCATTAAAATTGAGAGTGGCCCCACCGCCAGTAGAAAATGAGTTGCCGGTTGTGATACGGCTAGAATTAAAATTAATCGTTTGAGCGTCATAAGTGCCTGTGATATACCCTACATCACCTCCATTAACACCTGTGCCTCCAAAGCGGATATTCCCTCCCACATTAAGCGTGCCGTTATTGAATTTTTGCGTGAAACTAGCCCCACCAGGGCTATAAGTGGTAAGGGTGTTCAAATAGTAAGTCCCAGAGCCTTGAATGCTACTAAAAAGGCAATAAGAGTTGTGCGTGGGGGAATTAGAACCGCTTTCAATATT

# Questionable array : NO	 Score: 5.65
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AAGCTATAAGTCCCTTGATTGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.91   Confidence: HIGH] 

# Array family : NA
//