Array 1 20800-22290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXR01000031.1 Gallibacterium anatis strain Gerl.3348/80 contig000030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20800 32 100.0 34 ................................ ATTGATGTAGCTCGATTGCCGAATACTTTAATTT 20866 32 100.0 36 ................................ TTCATAAAATCCCCCTTGTACGTTGATTTTAAATTG 20934 32 100.0 35 ................................ ACGAGTGAACGGTTATTATCAAGGGGGATCGGTTA 21001 32 100.0 34 ................................ TAGATCAGATTGAGCAATTTGTTAGCGAACAAAT 21067 32 100.0 36 ................................ ATAAAAATGAACCAATAGCAAGTAAATATGGCACGA 21135 32 100.0 33 ................................ AAGTTTTGGGAATGTAAAATCACCGTTAGCCGT 21200 32 100.0 34 ................................ AGCAGACATCACAGAAAGAGCTAGAGAGTACAAG 21266 32 100.0 34 ................................ TTTTTGAGCTATTTCCGCTTTCTCTTGCTCAATC 21332 32 100.0 35 ................................ GCCAATTAGACGGGATAGACCGAACAGCCGAGCAA 21399 32 100.0 33 ................................ AAGACAAAGTAAATGAAGATCCTGAAAACATTA 21464 32 100.0 34 ................................ TTATCAACCACAAGGAGCAACAAAATGCCAAGAA 21530 32 100.0 34 ................................ AGTAATTTCATTTACGACACAATCAAAAATATAG 21596 32 100.0 34 ................................ AGCGTTTTCATCTTTCAAACGTCTAAACTCACGC 21662 32 100.0 34 ................................ AAGTTGTGGGACAACTAAAGAACAACAACTATGA 21728 32 100.0 35 ................................ TCAGAAGACACTGTTGAGAATGAACCTAGTGCAAT 21795 32 100.0 34 ................................ ACTTGCACAAGCGGCTCCATCAATCAATATATCT 21861 32 100.0 34 ................................ TCCGTCGCAAAATCCGAACTCAATCGTATATCCC 21927 32 100.0 35 ................................ ATTTAATGCTGTATCTGCTGTTGATTGTGCTTTAT 21994 32 100.0 34 ................................ CGGTCAAAATAGAAGAACGGACACCATTATGAAA 22060 32 100.0 36 ................................ ATTTCCCACAAGGTTAATTTATTGCGGTGTTCATTG 22128 32 100.0 33 ................................ TTTATAAGGCAAAGAATGTTTATTAAATGGTCG 22193 32 100.0 34 ................................ ATTGCGATAAATCTCACACATATTGTCCTCGTGA 22259 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 100.0 34 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : TACCTCTTTGCGGAGGAAGTTTACGGTGATGATTCGGTCGCCTCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 13302-13073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXR01000035.1 Gallibacterium anatis strain Gerl.3348/80 contig000034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 13301 32 100.0 34 ................................ TGGTAACTTATGGATAACATCCATAAGATCCCAA 13235 32 100.0 33 ................................ TAATAACCGGTTATAAGGATTGGGGTAAGGCAC 13170 32 100.0 34 ................................ CTATATAGGCGGATTGCCTGAACGTAAGGCGGTT 13104 32 90.6 0 ...........................T..GT | ========== ====== ====== ====== ================================ ================================== ================== 4 32 97.7 34 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : ACCGTGAATTGAAACATCCGATACCGCAAAACTTGAAAATGAAGCA # Right flank : CAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCAGCATTAATCATTACCTAACACATTTAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGTCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTACGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //