Array 1 560302-557709 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJVA01000001.1 Gardnerella vaginalis strain GS 10234 NODE_1_length_1480887_cov_413.838571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 560301 28 100.0 33 ............................ CAATGAGCGATTTTGTAGAAGCAGGTGCAACGG 560240 28 100.0 33 ............................ CATTCCATTCATAGGGTCAAAAAGTGAACCCAT 560179 28 100.0 33 ............................ CTGTTAATAACGCTACAGAATCATGGCAAGCTA 560118 28 100.0 33 ............................ CTGTAACACCTGTAGAAACGCAGAATGTTGATA 560057 28 100.0 33 ............................ TTGCAGACTGCTTTTACGGAAGAACAAGGACTT 559996 28 100.0 33 ............................ CATACGTGCGCGTATTGAGTGTAATAGGTGTCT 559935 28 100.0 33 ............................ CGGTTTCGTCGAAAATATCGAAAGTATCCTGCA 559874 28 100.0 33 ............................ CTAAATGCCGAACTCAGCGACTACGCTAGTAAT 559813 28 100.0 33 ............................ TCAACTACTTTTGAGTGTGGTATCTGCCCTACT 559752 28 100.0 33 ............................ TATCGCGATTCCGGCTGTCAACACTGATGGTTC 559691 28 100.0 33 ............................ CATATGCAAGCGCGACACGCAGGTATGGTGTGA 559630 28 100.0 33 ............................ TCATTCAAGAAAGAGCAGAACAATGAAAAAGTA 559569 28 100.0 33 ............................ CATGACCGCGCAACGCGATCGCGAATTTTACAT 559508 28 100.0 34 ............................ TATTACAGGTACGATGATGGAGAAACGCATTTTG 559446 28 100.0 33 ............................ CTTAGCAAGCAGTTTGTTAAGCTACGTGAGGTT 559385 28 100.0 33 ............................ CGGCGCTGATGGTGTCCTCATTCTTTTAGATGA 559324 28 100.0 33 ............................ CCAAAATGCAATTGCAAAGCCTTGCTTAATGGG 559263 28 100.0 33 ............................ TCATACTCACTCATAATCCATCGTCTCCTGATA 559202 28 100.0 33 ............................ TGCGCTCGCCTGAGTCTCGTAGTCGCCATGTGA 559141 28 100.0 33 ............................ TCAAGCGCGCCCTTCAAACCGCCGCCAATAATA 559080 28 100.0 33 ............................ TCAACTACTTTTGAGTGTGGTATCTGCCCTACT 559019 28 96.4 33 ..................A......... CTTAATGCACGATAGTAACACTTATGGCAAAAA 558958 28 100.0 33 ............................ ATTCAAACGCAAGCGCGCAAACCGCCTATAACA 558897 28 100.0 33 ............................ TATTTGTAGATTCTATCTTTTGTGCTTGGTTGA 558836 28 100.0 33 ............................ TCGCGAAGTCTAGTACTTGAGCTGCGTTCTTAT 558775 28 100.0 33 ............................ CTATTCAAGCTATGTGGGTGGTTGGCGACGACA 558714 28 100.0 33 ............................ CATGCCATTCATAGGGTCAAAAAGTGCACTCAT 558653 28 100.0 33 ............................ TATCGCGCATCACATGTTTTCGGTAATCCCACC 558592 28 100.0 33 ............................ TATCGCGCATCACATGTTTTCGGTAATCCCACC 558531 28 100.0 33 ............................ CTACACAAACGCGTAAGTACAGTGTATCCATAC 558470 28 100.0 33 ............................ TCAGGCGGTTCGTTGATGCCGTATCGCATAAAG G [558448] 558408 28 100.0 33 ............................ CAAAACCCAATTGCCATCCACTTATCACAACAC 558347 28 100.0 33 ............................ GGATGATGAGCAGCGTTTTAGAGATGATTTGAA 558286 28 100.0 33 ............................ TTAGCAGTATCAAGACTGATATCCCATTGTGAA 558225 28 100.0 33 ............................ CACTTTGCACAATATACTCATGCCACAAGCCCT 558164 28 100.0 33 ............................ CTGGCAAGGTATGTTAAATACTAGCATTGTACC 558103 28 100.0 33 ............................ TGCAACAGAAATGTCTTTTTATCATACCAATTA 558042 28 100.0 33 ............................ TCTGGAAAAAGTATACAAGACGCGCAAAGATGA 557981 28 100.0 33 ............................ CTGCCGTTTACTAGCCGTGAGTTTAAGAAGTAT 557920 28 100.0 33 ............................ TCATCGAGAAAATCGCCGCTGAACTCCATTACA 557859 28 100.0 33 ............................ CTACGAAAATACAAAGGATAGCGCGGAAACATC 557798 28 89.3 33 ..............G.....A.....A. TATCGATGACACACCATATCCACGCACTGGTAA 557737 28 78.6 0 A........T.......A.A.AC..... | A [557711] ========== ====== ====== ====== ============================ ================================== ================== 43 28 99.2 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATAAAATTATTGAGCTAACTGGTATTACAACTAATATGCTTGAGTCTTATGGTGTAGGATTAGATTTAGCATTAAGAGAATTCATTGATTTTATCGGAAAATTACCGATACTTGGATACAATATACAGTTTGATATGTCATTTTTGAATTCTGCTTTATCTTCATTAGGTGAAAGATTTGACGATTCTCTTTTAATTAATAAAATTTTTGATATCTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAATTACCAGCTAAAGACGGTGCTGCACGAATACAACATTTCTGAATCCGTTCCGCATAGAGCTCTTCTGGACGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGTTAAAATTTCTTGCATAATAGTAGAGTTGAAAGTCATGTGCAATAATGATAACTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : ATAAATATTGTGATACACTATAACCAGCGTGGGGATCTCGGCAACCAGCTTTCAAGACTGGAACATCAGTCTGAGGAGCACCCCACGTTTTTCAGTTTTTTGCAACGATTGAGCGAGAAAAAGAAAAGGGTGGCGCGTTAATACCTTGTTCTCAGATGTGGAAGATAAGAGAGGTGTGAAAAGCTAATGGATATGATGAAACTTTGTTATGACATGGTTGAAAAACTTCGTCCCTATGCTGAGTCATACATGGATAAGGTTTCCGAAGAAGAAGCCAATAGTGCTATTCGAGCAGGCGAACCATCGATTGCAATTGATATTTATTTAGTAGAAGCATGGATGCACAAGAGCGCACCTAAAGAGCTGCTAATAGAAGCCTATAATTTGCTAGACCCTTATGAATGTGGTGATGACTACGACGATATAGCAGACGATTTAGGAGTCCCGCGTAAAGTTCATTCACCAGATGAATAAAAAATAATTTTTATACTAAATTAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //