Array 1 175728-174899 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JMIP02000025.1 Halostagnicola sp. A56, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	==============================	======================================	==================
    175727	    30	 100.0	    38	..............................	CCAATTGAGTAATGCGATTGTGGCAAGATACTCCCCAG	
    175659	    30	 100.0	    37	..............................	TCGATCGTCTCCGACGTCGACTCGATCTCGTTGACGA 	
    175592	    30	 100.0	    36	..............................	TCGACGGAGTCGAGGTAGGTGCTGTCTGCTTGCGTG  	
    175526	    30	 100.0	    37	..............................	GTGACCTACAGCGCAGACGACGGTGACGAATCAGATG 	
    175459	    30	 100.0	    38	..............................	GTCCTCGAAGGCCGGCGCATCACCCGCGGCGTCACCGC	
    175391	    30	 100.0	    37	..............................	CCATTTTAGTGTGCCTGCTGAATTGTGATGTCTGCAG 	
    175324	    30	 100.0	    36	..............................	GCGGACAAGTTCGCCGACCGAATGAGCGAGGAAATA  	
    175258	    30	 100.0	    34	..............................	GTGATTTAGCACCCACGTCGCCGAGAAGTCCGGG    	
    175194	    30	 100.0	    35	..............................	GCCGACTGTCGCGACGCGTGGGGATCGAACCGCTG   	
    175129	    30	 100.0	    37	..............................	TCGACGGCCTGCGCGCCGATACGGCTCGCGAGTACGC 	
    175062	    30	 100.0	    37	..............................	GACTCGCCGATGTGCTCGAGGAACCAGTCGAGTCGTT 	
    174995	    30	 100.0	    37	..............................	AGTTGTACGTCCGATCCCACCCAGTCGAGCGTAAAGT 	
    174928	    30	 100.0	     0	..............................	|                                     	
==========	======	======	======	==============================	======================================	==================
        13	    30	 100.0	    37	GTTTCAGACGGACCCTTGTGGGGTCGAAGC	                                      	       

# Left flank :   GGTATCTGAGTGCCCTGGAGAACAAATACGACCTGATCACGTCAACAGGGACCAGTCGCGGGACAACCTACGCCGTCTCCGACATCTGAGGACTTCTGCCACTTTCCCCATGTACCTGTACTTCTATTGATCCTTCAGAGCTGTAATCTGTTTTTCTCCATCATCTGCGAATATGATTAAGCCATCTAGAATAACTGGGACTCCAGGATCCTCCGCACCACTAGTATCAAAAGTCCATTCTACGTCACCGTCTTTTGGGTCTACAGCATGTAATGTTAAACCATCTTGTGGGTTTTCTGACCCCCACACATACAATAGATCCCCTGCAACTACCGGTTTCCATGCTGTAATTGCACCTTCATAGTCCCATTCTTGAATTTCTTGTTGTGATTGAAGATCTATGGCAGGAAAATTCAGATATTCTGAAGTTGGCACGAAAGCGGTATCTTTGTTAATTGTGGGGCTTGATAGTTTGCGGGAAGCGTCTGCTGGTCCCAATT
# Right flank :  AAGAAGTCGAAGCGCTGGACGCCAGAGACGATGCAAGTTTCAGACGGACCAGTTCGTGCCTGGTTTTCGTATCACCAGTTGGATCGTGGAATCTGTTGATGCTATCAAGTGAATTTCGTAGAGCATCACTACGCCTTTTCTGAATTTTTGATTCACCCAGTGCCAGCGATTCTTCGCCATCGTGCATCCCATAGAACAATCCGTCAGACCCCTTGACCTCTTGAACTGGCTCCTGAGTCCAGAATAGCTTGTGACTGACCATTGGTATCTCAAGAACTGCATCAACGAACAGAAAGAGAATCAGCTCACCGAGCTTCCCATCAGTGCTGGGATTGTCTGGAAAATCAGATCGCTTCTGAGCTTCTTTTGAAGGCCACTTCCCACTATCCAACATGTCGTTAATTTCTGTCTTTGAAAATACAAATTGAGGGTATTTCCGCGGGTGGGAGACTAAGTGAGATCTCATTTGACTCTGATTTCATGCTCTGGCTATTTTGGCA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCAGACGGACCCTTGTGGGGTCGAAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.30,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.87   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
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