Array 1 964-449 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACYPO010000067.1 Klebsiella pneumoniae strain CFSAN059626 contig00067, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       963	    29	  93.1	    32	............TG...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
       902	    29	  93.1	    32	............TG...............	TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
       841	    29	 100.0	    32	.............................	TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA	
       780	    29	 100.0	    32	.............................	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
       719	    29	  89.7	    32	............TGA..............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
       658	    29	  96.6	    32	.............C...............	TGACTTTTAAAAAAAATCAGCTGAAACAGCCG	
       597	    28	  89.7	    32	.....-......TG...............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
       537	    29	 100.0	    32	.............................	CACTACCAGATCCGAATGGACACCCGTAATGA	
       476	    28	  93.1	     0	.......................-....A	|                               	
==========	======	======	======	=============================	================================	==================
         9	    29	  95.0	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGC

# Questionable array : NO	 Score: 5.60
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGTGTGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,5.18   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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