Array 1 15696-14075 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSJ01000025.1 Klebsiella pneumoniae strain EuSCAPE_IT217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 15695 28 100.0 33 ............................ TGAAAAACCTTCACAAATCCTGGCCCCGGCAGG 15634 28 100.0 33 ............................ TTCATCATATGCATAGGCGGCCTCTTCTGGTGT 15573 28 100.0 33 ............................ CGCTGACATGGCGAAGCCGTTAAAGACCAATTC 15512 28 100.0 33 ............................ CATGTAAGCCTCTTTCGCATCCTCGATCAGGTC 15451 28 100.0 33 ............................ TGATCAGCGAGCTGCTGTTGAATATCGAAATTG 15390 28 100.0 33 ............................ TCGCTGCGCGACGCGCGGCACTACCGGGCGGAG 15329 28 100.0 33 ............................ TCGCCGAGCGGATTTACGATACGGAGTGCCTCT 15268 28 100.0 33 ............................ TGTCGTCGTTCGCCGACGCAAAGCTTTGTCTGG 15207 28 100.0 33 ............................ TCGTGGTTACCAGGATGGTGCGCTGCAGATGAG 15146 28 100.0 33 ............................ CTGGTCGCTCCCATAGTGTGACGCGGGGAACGC 15085 28 100.0 33 ............................ CGAGTCCGGGACGCCTACGACGTGCGAGAAGTC 15024 28 100.0 33 ............................ TAAAAGGGTATTTGAGGCGTATAAACGCGCGGC 14963 28 100.0 33 ............................ CGTCGAGTACCAGCGCGGTGATCTGATGCGCCA 14902 28 100.0 33 ............................ TATGGGCTGAATGACTTCAAAGCCGGGGTTATT 14841 28 100.0 33 ............................ CAGGAGCACCTGGACCGCGTCGCGGCCCTGGGC 14780 28 100.0 33 ............................ TTAAAAAAGGCCGCCATATGGCAGCCTGATGGG 14719 28 96.4 33 ...C........................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 14658 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 14597 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 14536 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 14475 28 100.0 33 ............................ CCATGGCGGAGATAGAGACACTATTGAGTGAGT 14414 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 14353 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGA 14292 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 14231 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 14170 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 14101 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 27 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25332-24449 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSJ01000025.1 Klebsiella pneumoniae strain EuSCAPE_IT217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 25331 28 100.0 33 ............................ TAGACCATCTTTTACCCCGTTATAGTCACCCAA 25270 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 25209 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 25148 28 100.0 33 ............................ CAGCGTGACATTGAAGATATCAGTTTCGTCATG 25087 28 100.0 33 ............................ TATGGAGTTGGTTTATACTGGCTGGGTCGATAA 25026 28 100.0 33 ............................ CCCAGATGCGGTTTTCGCCCGTTCGAATATGTT 24965 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 24903 28 96.4 33 ..............T............. TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 24842 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 24781 28 100.0 33 ............................ TTTGATGAGGAATATGTAGTTTTCCCTGGCGTG 24720 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 24659 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 24598 28 89.3 33 ............C.........G.G... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 24537 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 24476 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAACATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7255-6073 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSJ01000013.1 Klebsiella pneumoniae strain EuSCAPE_IT217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7254 28 96.6 33 .....-....................... GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 7193 28 96.6 32 .....-....................... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 7133 29 96.6 32 .............C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 7072 28 86.2 32 ...C.-.......AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 7012 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 6951 29 93.1 32 ............TC............... TGACTTTTGATGAGATTTTGTCGATAAAAATT 6890 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 6829 29 86.2 32 .A......T...TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6768 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 6707 28 93.1 32 .....-.......A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 6647 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 6586 29 96.6 32 .............A............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6525 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 6464 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6403 28 89.7 31 .....-.......G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6344 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6283 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 6222 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 6161 29 100.0 31 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGG 6101 28 72.4 0 TGTA.T.......A.........-....A | A [6090] ========== ====== ====== ====== ============================= ================================= ================== 20 29 92.8 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAAC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //