Array 1 574909-574209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024871.1 Leptospira mayottensis 200901116 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 574908 29 100.0 32 ............................. ACTTTCAGGAGTTTTTTTCCTACGACGTATTT 574847 29 100.0 32 ............................. TATTGGGATAAGATAACTGTTAAGCTTAATCA 574786 29 100.0 32 ............................. CAGAAGAGGCAAAAGAGAGACAGGCTGCAAAA 574725 29 100.0 32 ............................. ACATGAACCCGTCGAGAGGTTTTGAGTATCCC 574664 29 100.0 32 ............................. ACATGAACCCGTCGAGAGGTTTTGAGTATCCC 574603 29 100.0 32 ............................. GGCGAGGGCTACACTCCTGAGCAGGTAGAGGA 574542 29 100.0 32 ............................. TGACAGCTATTAAAGAATTGTCATTAGGATTA 574481 29 100.0 32 ............................. TTTGTTTATAAACGCAGTTCCTGAACTAATAA 574420 29 100.0 32 ............................. ACAATGTGGCCAGTGCTTTGTTATGGAGTTGG 574359 29 100.0 32 ............................. ATGATCTTTTCCCCGTCAGTTAACCCGAACCC 574298 29 100.0 32 ............................. TCGGCAACCGGTTTTTCGTTAAAGTAAATCCA 574237 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATACTTTTTCAGGATTGTATGGAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTCATATAATTCCGATATATATAATATTATGATAAATGATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTTGAGATGCCCCCGTTTTTAGTACCAGTGTAAAGTGTCAAAATCCACTTAAGCAGAGCGTCTTAAATATTCCTCCGGAGTAAGTCCCCCAAGAGAACTATGTGGCCTTTCAGAATTATAGAAATTTCTCCAATCCTCGACAAGGCGCTGTGCTTCTTCAATATTCTTAAACCAATTTTCATTTAAACATTCGTTTCGCATTTTTCCGTTAAAGCTCTCGATGAAGGCATTCTCAGTAGGCTTACCCGGCGTAATAAAATGAATATCGACTCCTTTTTCAAAAGCCCATCGTAAAAAAGCTTTTGATGTGAATTCGGGACCGTTATCCACAACGATTTGTTTTGGCAGGCTACGGACTTCAGATACTTCATTCAAAATTCTTACTAATCGTTCCGAAGTGATTGAGAATTCCACCTGCGTTGCCACGGCGAATCGTCCAAAGTCATCGATGATATTCAATATTCTGAATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 846409-847350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024871.1 Leptospira mayottensis 200901116 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 846409 29 100.0 32 ............................. AAAGCACACCCTTTGTATACATGTTTTTCCAA 846470 29 100.0 32 ............................. GATATTACCAGTAAGCTCAAAAAATGTAGCAA 846531 29 96.6 32 ............................T CGACTTGAGCGTCTTTTTCTTTATTCCACCAT 846592 29 100.0 32 ............................. AAATCTATCAAGTGGAAGTCTCAGCGGATCTG 846653 29 100.0 32 ............................. CGCATCAGAACAATCCAATGAAGACTCAGGGC 846714 29 100.0 32 ............................. ATCGTGGATCGACTTTGCTTCCTTTGCCATCT 846775 29 100.0 32 ............................. TCCCGCCGGTTTAATTCATCAAACATTCACAT 846836 29 100.0 32 ............................. TCGCACCACTGCTGGAACCTGTCCATCGCCAA 846897 29 100.0 32 ............................. TTTATGAATCCACATCCAGGAGAAATGCTCGC 846958 29 100.0 32 ............................. TCTATGTTGACATTTTTTTATCTCCAATTCCA 847019 29 100.0 32 ............................. TGGTCACTCCTCGGATTTCTTTCTGTAGTCCT 847080 29 96.6 32 .........G................... TCAGTCGGGATTGTTCGGATCGAACATACGGG 847141 29 100.0 32 ............................. TAGGCTATAGCTATAACATTTATTGCCATAGC 847202 29 100.0 32 ............................. CAAACTGGCCAAATTTGACCAGTTTACGTTTT 847263 27 89.7 32 ........--..........A........ TTTTCCCATCCTTCGCTTGCGCGTTTCATTTG 847322 29 82.8 0 .........G..............C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATGCTTTTTCAGGATTGTATGAAAACGATGCATTTTGTTCTATGCACACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTTATAACATTCAATTAATCTAATTCCGATATATATAATATTATGATAAATGATTTCTCTCTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAAATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGTGAGATGCCCCCGTTTTTAGTACCAGTGTAAAGTGTCAAAATCCACTTAAGCAGAGCGTCTTAAATATTCCTCCGGAGTAAGTCCCCCAAGAGAACTATGTGGCCTTTCAGAATTATAGAAATTTCTCCAATCCTCGACAAGGCGCTGTGCTTCTTCAATATTCTTAAACCAATTTTCATTTAAACATTCGTTTCGCATTTTTCCGTTAAAGCTCTCGATGAAGGCATTCTCAGTAGGCTTACCCGGCGTAATAAAATGAATATCGACTCCTTTTTCAAAAGCCCATCGTAAAAAAGCTTTTGATGTGAATTCGGGACCGTTATCCACAACGATTTGTTTTGGCAGGCTACGGACTTCAGATACTTCATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2768685-2769389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024871.1 Leptospira mayottensis 200901116 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2768685 29 100.0 38 ............................. TCGGGTCGCGACCCCGTAGGAGCGACACGTCCCGCGAC 2768752 29 100.0 32 ............................. AAACACATTTGCTTTTTGTGAATCATTAATAA 2768813 29 100.0 31 ............................. TAAAAAGTTCAATAGAAGTTCAAGCTCCTAA 2768873 29 100.0 32 ............................. GGAGATTTAACGTCTCCTATTCCGAACCAACC 2768934 29 100.0 32 ............................. GGGATAACGCGTTTGCCTAATACGTAATTTGA 2768995 29 100.0 32 ............................. AATCTCGATCTGTTCCTCACGGTTCGGTGTGT 2769056 29 100.0 32 ............................. GGAGAGAACGCGTTTGAAAAAATCAAACGGTC 2769117 29 96.6 32 ............................C TTGACAGTGACCGCACCCTTTTTAGTGAGCCG 2769178 29 100.0 32 ............................. TTTTAGTGTCGAACGTCGGGCCACTCGGCCCA 2769239 29 100.0 32 ............................. GAGAGAGAAATCCGCAGGCTCTCGAAAATCTA 2769300 29 100.0 32 ............................. ACGGAGAAGTTCGATTCCCGGACGGAAGAGCG 2769361 29 89.7 0 ..........................ATT | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 33 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CCGGATAATTGTGAATCTTGTTACGTTCGAAGTACTAATGCGATTCTTATACCGGTTCCAGATATTTCAATGAAAATTGATTTAGAGATATGAAAGACTCAACAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCTTGGAGAACTAACTCCGGTGAGATATTTTAGACAATCCGTTTAGAGGTTTTTCGCAATTTCAGTCGGTATTTTAAATGGGGCCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCTTTTTTTCAGCAGAAAAAAGTCAGCGCGTTTTAGTTGTTAATGACAATCTTCAAACACGGATTCTGCACCGCATATCAGTGGGACTTGATTACGGGTAAAGTTGTAAAAAGCTTCCTTAGAAGCTCGTGTTCTTAGTAAGACGATTTGCCATCATAAATTAACTTGGACACGAAACCCAAAAATAGATTGCAAAATCCAGATTTATCCTATACAAGTTTTTAGC # Right flank : TTTCAGTCAAAACAGATCAGTAATAAAAATTCGGGAATAGAATCCAATTTAGAACTTTCAGTGTAAAAAACTAAGAACCAGTCTCAAAACCTAAAAATGTAGGAACTCTTACCAATTTTAAACAAGCCGCACAAAAACGGTATAAACCGCCAATGCGACGTAATCTGTGGGAACTCCCACATTTTCTTAGAAACTTACCGGACACGAAAGATACTCTTTGAAGGTGTTGAGACGAACTCTAAAACAAGCATAAGGCGATAAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGATTGAGATACCTTCCAACCGGATTCGGTAATTTTCATAAGAGTATTGTTTTGATCCAAAGATTCGAAAATCATTTCCGTTTTGGTTTTATATCCGCCAACAGTTAGAAGCTCATTTTCACCCTCATAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3090317-3090833 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024871.1 Leptospira mayottensis 200901116 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3090317 29 100.0 32 ............................. TAGGAGCGACACGTCCCGCGACTACTGAGCGC 3090378 29 100.0 32 ............................. CAAAACACCATGATTGTCGCCCATGAGTTCGT 3090439 29 100.0 32 ............................. TTACCGATTCCACGCCCATCAGAACGGAAGGG 3090500 29 100.0 32 ............................. GGATTCTCGGTTTACTGGAAAGTTGAAACGGA 3090561 29 100.0 32 ............................. TGAGGTCGATATAAATCCAAAAGTTATCTTAG 3090622 29 100.0 32 ............................. ACACCTGAAATAATTTTTCTTGGCTGGAAGAC 3090683 29 100.0 32 ............................. GCAATACGGGCAGAACTGAAAATTAAATTTCC 3090744 29 100.0 31 ............................. ATAATAAAATTGATAATAAAGAGAAAGAAAA 3090804 29 89.7 0 .........................G.TT | T [3090825] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAATCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TTCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATCCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAACGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACGAGTAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //