Array 1 1223300-1224915 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016406.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1223300 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 1223362 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 1223423 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 1223484 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 1223545 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 1223606 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 1223667 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 1223728 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 1223789 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 1223850 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 1223911 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 1223972 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 1224033 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 1224094 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 1224155 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1224216 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1224277 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1224338 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1224400 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1224461 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1224522 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1224583 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1224644 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1224705 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1224766 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1224827 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1224888 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1241198-1243095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016406.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1241198 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1241259 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1241320 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1241381 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1241443 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1241504 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1241565 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1241626 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1241687 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1241748 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1241809 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1241870 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1241931 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1241992 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1242053 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1242114 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 1242175 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 1242236 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 1242297 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1242358 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1242416 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1242477 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 1242538 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 1242599 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1242660 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1242721 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1242782 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1242843 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 1242944 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1243005 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1243066 29 93.1 0 A...........T................ | A [1243092] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //