Array 1 58788-58579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRD010000010.1 Gilliamella sp. W8129 NODE_10_length_60902_cov_235.913856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58787 28 100.0 32 ............................ TATTGAGATATCAGTACTCAGACTGATATCTA 58727 28 100.0 33 ............................ CACGGGGCATTACTAATAATCGGTGCTGTCGCT 58666 28 96.4 32 ....................T....... TTATATCGTTGAACAACAGAACGGCAGAGTAA 58606 28 78.6 0 ....................TAAGA..T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CTTAGCTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGACGATAAAAACGATTTTGTGTCGCGACATTCGCAATGTGCTGACAACTGAGCGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGATTTGTCAGGAACAAATCACAGCCGGTGCGTTAACAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAACAAACGTCCGAAACTAAAACAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATGTTGAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAAAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCGTTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGCAGTTTATTATTTCAGCAATTTCCCAAATTTCCGAAATTCTCGCAAAATTTTTCAAAATTTCTTAATTTAGTCTGTTTATCCCGGCAGATGGTTTTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49239-49027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRD010000001.1 Gilliamella sp. W8129 NODE_1_length_434338_cov_281.930635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49238 29 100.0 32 ............................. TTTTGGAATTATTTTAAACTATTTTAATGTTT 49177 29 100.0 32 ............................. CAAAACACAAATTTAATCCCACATATTTTTTG 49116 29 100.0 32 ............................. GGTAGAGAGTGTCAGGTGCGGTTACCTTGTTG 49055 29 82.8 0 ...........GC.............TAT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : AGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : AGATTTAGTAATTAGTTAGAATCAAATATTAATTAGCTTTGATTAACCAAAGCCAAAATATTTTGGATGGCTGTTTTAGCTTGATGGCTATTTTTCCAACATGATGATCCCGTTAGTAAAGCACCTTTATTTAATATTTCATCTAAATTGCTATTACGGAGTTTTTCGAAGGAATCTAATTCCATCTGTTGTAATCTTTCAATAATTTTATCGCCAACATATTTAAGTTGTAGCAATTGTTCTTTTTCTAATTCTGAAAAGGCCATTTTTTCTATCCATTTAAAAAATTGTTATGATGTTACTAATGTGAATTTAGTTTTTTCCATTTCCTGATTTTAGTTCTAAAAGATTTAAATGGCGCAACTGAATTAATATGAATAAATCGTGCCACAGGCCATGCTGAAGGATAAGGTTTTGTCCAATTGCGAGCATCTTTAGTAAAAAGCGTATTATCATCTAATGACTCAATCCAACTATTCCAAGTAGTCAGTTTCTGCTTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67274-68278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRD010000001.1 Gilliamella sp. W8129 NODE_1_length_434338_cov_281.930635, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67274 29 100.0 32 ............................. GTTTAAAATTTCATTTTTTGGGTTTTTTACCA 67335 29 100.0 32 ............................. CTGGTTGTGCAGCGATGTGTATTTCATCAAAA 67396 29 100.0 32 ............................. CTTGAAGAAATAAAACGACGATTTGGTTTTAG 67457 29 100.0 32 ............................. CGACATCTGCGGCAACTACTGCGACTCAAATC 67518 29 100.0 32 ............................. AAGTTTGTATAGGGAATTTAATTTAAGTTGTA 67579 29 100.0 32 ............................. ATAAAATAATTGTTGACTAATGACGCGCGCCA 67640 29 100.0 32 ............................. GTTAATAGCTCTAATTTTATTGAAATCTCATC 67701 29 100.0 32 ............................. ACCTTCAATCTCAGGTTAAGAGCCAAAAGGAT 67762 29 100.0 32 ............................. AAAATTGGGAATCATATGTTGGTACCGCTGTT 67823 29 100.0 32 ............................. TCAGTCAAAACAATTATCCCGACATTGTCAGG 67884 29 100.0 32 ............................. CCTTTTTTTAGATCGTCGATCTCGTTATCTGT 67945 29 100.0 32 ............................. AATTTAACAAATTCATTAATGAAAACATTTTT 68006 29 100.0 32 ............................. ATATTCGCCAGTGCAATATTTGGGCTCTGATT 68067 29 100.0 32 ............................. CAAGTGGTAATTCCCGCACGTCCTTGGCTTGG 68128 29 100.0 32 ............................. GCAAATTATAACGTCGATGTGTATAGCAATTA 68189 29 100.0 32 ............................. AAACAGACCTAACACCTGATTTTCTGAAACAA 68250 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCATCAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266910-267610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRD010000002.1 Gilliamella sp. W8129 NODE_2_length_335817_cov_235.381831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 266910 29 100.0 32 ............................. CGGCGATAAAAGCCAATAAAGAAGGTAAGATA 266971 29 100.0 32 ............................. ATGCCGTGCTAGTAATAGACGGCTACGAAATT 267032 29 100.0 32 ............................. TAAAGGGGTTGGCAATTTCAGGAGCATGTTTA 267093 29 100.0 32 ............................. TCTTTTATAAATACAAAGATTATATAAATACC 267154 29 100.0 32 ............................. GGGCATTATCATGGACGGGATTATTTGATGAT 267215 29 100.0 32 ............................. AAAATGGTGCGTGCGAATTTAATAATTTTTTC 267276 29 100.0 32 ............................. TTCTGATGTTTTTCTTAACTGCTGTTTAACTG 267337 29 100.0 32 ............................. CTAATGGTTAAATCAGCTTTAACTTGGCGCTC 267398 29 100.0 33 ............................. GGGATCGAATTATATTGCACGCTATGGATGGAT 267460 29 100.0 32 ............................. GAAATAATATTATGGCATATTATAGCATAGAG 267521 29 100.0 32 ............................. ATATTTTGTCAGTTTCGTTTTTAACATTGTGC 267582 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTAGTTACCCGTTATTTTGGTGGTATCAAATTAGGTACAGGTGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCAAACCTTTTAAATAACATACCATTACCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAAGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATACCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331146-330938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRD010000002.1 Gilliamella sp. W8129 NODE_2_length_335817_cov_235.381831, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 331145 28 78.6 32 .................CG....TTTT. AATTTATTCTCGATAAGATGATGCCGAATCAT 331085 28 96.4 32 ....................C....... TGATGCGTTATCTAATAGTGATTCGTCGTTTT 331025 28 100.0 32 ............................ TCGAGTTACAACTCCTCAAATTGCAGAACACG 330965 28 75.0 0 .......G.........CG....TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 87.5 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TATTTCTTAGTTTTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAAAACGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGTGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCGCAAAACAACAAACGTCCGAAACTCAAAGAATTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTACCCCTTTTTTTGGGCTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTCTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTCTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATTT # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //