Array 1 198560-199109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHB010000001.1 Gardnerella vaginalis strain UMB1350 ERS1455157_SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 198560 36 100.0 28 .................................... ATTCTACGAGTGATTGCAGCACGCGGTT 198624 36 100.0 29 .................................... AGTACCCGGACGAGCACACGCGGCAACAG 198689 36 100.0 28 .................................... GGTTGCCTACTATTGTGATTGTGGTTTC 198753 36 100.0 28 .................................... GGCTATCCTTGACGGCTTGCTGAAAGGC 198817 36 100.0 28 .................................... GCATGATTTCAAACACAACAACATAATG 198881 36 100.0 28 .................................... ACCATTATCAAGAAGCTGCACGCGGATA 198945 36 100.0 29 .................................... TACCAGCTGATTTTGTTATTGTTAAAGCC 199010 36 100.0 28 .................................... GTTTGAAATTACTGGCAATAACAAGAAG 199074 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 28 CAATTATATCAAGAAGGATAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACTATTCCTAGTGCCTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACGTGGAAGAATTTCAAGTACCACAATTCATAAGGAGCGGATTATGAAAGTCGATGAAGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCGGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTTCTTGATATGGGATATGCAATGGTGCAATTTTCTGTATATGTTCGCTATAGCCCCACACAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCGCCGCGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAGCGCTATTACAATGCTAGGCAAGAAAAGAAAGAAGAAACTCCAGATATTGCTGTGCTTTTTTAATCGTAAAACACTTTATAATAGTTGAAATTCTACCCTTCTTGACGATATAC # Right flank : CTAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCTAATATATCATTTTTAAGAAATAGAAAACAAGTGAACTTTTCTAAGTTTTGCTAAAAAATTTAAAAAGTAACATATTGATATAATCAATAGATAGTGTAGTTGAAAATATTTTTACTTTACGCATGTGTGCGTTTTTAAAAAGTATCTTCTGGGAATGTATGTAGGATTATAGGCTCAAAAGTGTGTAAAGCTAAGCTGATGAATATTCTGTGCATAAACCATATCTTCAGCACCGTTACTAACTCAGTTATCTAACTGAGAAAGTAACGGGAATCACCCAAACACTGTTAAAAACTCAGTCAAGTATCTGAGAAAGTAACGGTCATATGTTACTGGTGCAGTAGCTAATCTGCGTTAATAACGAATAATTGCGATTTATCGTTACTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAAGGATAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 505388-504445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHB010000001.1 Gardnerella vaginalis strain UMB1350 ERS1455157_SC_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 505387 28 100.0 33 ............................ CGTATGGATCTGCATCGAGTGATAGTTCTAGCA 505326 28 100.0 33 ............................ CTAACCGTAGGCGTGAATAAGCAATTTACTTTC 505265 28 100.0 33 ............................ CAAAGGGGACGGCACAAACACCGCCCCCTTTTC 505204 28 100.0 33 ............................ TTATAGGCGCGGCACTGTAAAGCCGTCAGATAT 505143 28 100.0 33 ............................ TACGATTTTAGAGCTAAGAAAGACGCGCCATGC 505082 28 100.0 33 ............................ CTTTAGTTTTACGCGGGGACCGCTTAGCAAAAT 505021 28 100.0 33 ............................ CAAGCCATTAATGACAGAATTACAAATGAAATT 504960 28 100.0 33 ............................ CGCCAACCGTTATTTCCGATTGATAGCCAATGT 504899 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 504838 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 504777 28 100.0 33 ............................ CTGCGGAATAACCGGCGTATTCCAAGTCCACGC 504716 28 100.0 33 ............................ TTCACCGTTAGATACGCTAGCACTCATATAGCA 504655 28 100.0 33 ............................ CCACACGCTTAGCGGTTTCGCCAGCATCCTTGA 504594 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 504533 28 100.0 33 ............................ TAAGGATTCAGTTAGTTTTGATGGTGCGGTTGC 504472 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTACCAGCTAGCGAGGCTGAAGGCTTGGCATTGTTGCACGAGTATAGCGAAGACGCGAAAGACTAAAAAATTTTTGTTCACCCCCTTGCTAATGTTCTCACATTGTGATAATATTTAATTATGAAAGGAGGTGAACATGGAAATAAAAGATTGGATTGCGCTAGTGCTCAACATTCTAACTATCATCATTATGATTTGGTTAGATTTACGACACGACGATAAGCGCAAGTAAAAAACGGGGGTTCCAACCACTCATATTGGCTAGAACCCCTAGCCTCAATCTTTCCACACGATTATGAGTAGAGCAAGAGTATTAGGTATTATTTCAGCTATCTGCGCTATTACCGCGGTAACAAACGTTATTTTGCAAGTGCCATTCGCTGGCATTGGGTTCACTCTAGCTGCTGGCATTGCTGGCTTATCCGCTGGCTTAACGGGCAGTAGCAAAGAAAAATAAAAGGAGCTTACCATGTTAGATGAGAACGGACAAACAGTACTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //