Array 1 76238-72413 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYV01000007.1 Haloferax sp. Atlit-16N P_contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 76237 30 100.0 36 .............................. ATTCGCGTCTCCACCGAGCAGCAGAAGCAAGACGGG 76171 30 100.0 37 .............................. GGGGTTAGTCGGCGCGGTCGTCCTCCGCTTGCACCGT 76104 30 100.0 37 .............................. CAACGGATAGCGACCGGCGGTCGCGTACCCCCGGATG 76037 30 100.0 34 .............................. ACAATCGACGACGAACTGCCGGTCGCAAACCAGC 75973 30 100.0 35 .............................. ATCCGCCAGTTCGCGAACGACCTCGAAATCCTCGC 75908 30 100.0 36 .............................. GTCCAGAAGTCGCAATCAACACGACGAGTGCCCTTC 75842 30 100.0 36 .............................. CGCCGTAATCCGCCAATGCTCCCGACTGAATGGATT 75776 30 100.0 36 .............................. CACTCGTAGGCTTCGCCGACCGACTCGGAGAGCGGG 75710 30 100.0 37 .............................. ACGAGGTCTGCACCAGAGCAGACGGCTGGGAGACTGC 75643 30 100.0 35 .............................. AGATGTCCGCGATGCGGTGACGAGACGGCGACGAA 75578 30 100.0 36 .............................. TCTGCGCGCCAATTCGATCACACGGCGACAGGGTAG 75512 30 100.0 35 .............................. TTTTCCCAACGCCGGTTTGTCCGTTCTGGGCCGTG 75447 30 100.0 36 .............................. AGTCCAAGGACGACGAACAAGATCGTTAGTTCAGGC 75381 30 100.0 36 .............................. AGTGGCCGACGCGCGTTCTCTGAGTCCTCGTGTTCG 75315 30 100.0 37 .............................. GCGGTATCAGGTCATCGACAACGTGACTGGTGTGCTG 75248 30 100.0 34 .............................. CTCCCGCTCCGCATCGTGGACAGTTACCGTCGGT 75184 30 100.0 35 .............................. GGCGCTCGTCCTAAATGGAGATCCGCTGTGGCTCC 75119 30 100.0 36 .............................. GTCGCCGTGGGGTCGTTCCGCGTCGAGAAGTGTGGT 75053 30 100.0 34 .............................. TATCGATCGTCTCCCCGACCGCGTCATCGGTGGA 74989 30 100.0 36 .............................. GCAAGATGGTAGTTCAGATAGTAGAGAGGAGTCTAA 74923 30 100.0 34 .............................. CGGCCCCATGAATGGGTGGTAATGATGACTGACA 74859 30 100.0 37 .............................. GGCTACAAGGACATCACCGCGTCGGCGCTTATCGACG 74792 30 100.0 37 .............................. GGCTAGGAAGTGTAATCAAAGTGAGAGCCGCATGACT 74725 30 100.0 37 .............................. CGTTCGTAACCGACTGGAGTATCTGGTTGACCAGGGC 74658 30 100.0 36 .............................. GAGATTCTCCACGTGGGTGCGGACGAGGAGTGCGAC 74592 30 100.0 35 .............................. CCGGATGGACGACCGCGTTGGCGGGAAGCAAGAAG 74527 30 100.0 36 .............................. TGGATGCTCGCCATCGTCCTGTACAACTCGTGGGCG 74461 30 100.0 33 .............................. CCGACGAAAATATCACGTCGTTGAAATTCACGT 74398 30 100.0 36 .............................. GTCCGGCCTCCGATGCTCGTGAGTTCGATGACGGCA 74332 30 100.0 36 .............................. GCCGACATCGCCAGTGGCGACGACCCGACCCGCCAA 74266 30 100.0 35 .............................. TCTGAAATCCCGGAACCGTGCCGCCCAGCCCTCCG 74201 30 100.0 36 .............................. GTCCGGCCGCCGACAGCCGTGAGTTCTATGACAGCG 74135 30 100.0 34 .............................. GGCACGTCGAAATCGTAGTCGAACTCACAACCGA 74071 30 100.0 34 .............................. GGCGTGTTGTTGCTGCCGTCTTTATTCCCGCTCA 74007 30 100.0 35 .............................. CCCGAGCCGAGCCTGACAACACACCCTCGACCCTT 73942 30 100.0 36 .............................. GACGACGGTGCCGCCCCCGATCCGATGATCGAGACG 73876 30 100.0 36 .............................. ACCGGTTTCTCAACGCTCTGACCATGGAACTCGAAG 73810 30 100.0 34 .............................. CTCATCGTGAACAAAGAAGAGTTCCACGAGGCGA 73746 30 100.0 35 .............................. CAGACACGTTGACATCGACTTCGACCGGTGGAACA 73681 30 100.0 36 .............................. TGTTCACAGATGGGCCGGTGAGAGAAACCATCCCGT 73615 30 100.0 35 .............................. ACGACCGAGATGGTCGGTCTCCGTCGTGATCAGCC 73550 30 100.0 35 .............................. ACGACCGAGATGGTCGGTCTCCGTCGTGATCAGCC 73485 30 100.0 35 .............................. TTCATCAGCGACGCCAGCGACTGGTCGTCGTCGTT 73420 30 100.0 35 .............................. ACGGCGACCGGCTAGAAACGACCACGAACCGACAC 73355 30 100.0 37 .............................. TCGGTCCCAACGGCGGTGGGGTCCGTCCGGGCCGAGC 73288 30 100.0 35 .............................. GACGTGAGGTAGTGCGCCGCGTTCCGAGCGTTCAC 73223 30 100.0 35 .............................. CGACCGTCGTCGTCGCGGTCGCGGTCGAGGTGGTC 73158 30 100.0 37 .............................. AACGGAAGTGCGCTGTCTCGCCGTCCTCAGCTTCCAG 73091 30 100.0 34 .............................. TAGACGAACGTGTAGAATCCGTCGCGTCGAGCGA 73027 30 100.0 36 .............................. GACCACGAAAGGGACGGGTGCTTTGTGGAAGATTGG 72961 30 96.7 35 .............................C GAACGGCGGGTTCACCGCGAGTTCTTCCCGACCCT 72896 30 96.7 35 .............................C CGTATCATGACACTATTCATGAGTTTTTCCCCAAG 72831 30 96.7 36 .............................C AAGGCGGTCTTCAACCGTATCGACGACCGCGACGAC 72765 30 96.7 34 .............................C TGTATGAGTAAGCGCGACCTGAAAAGCGGCCAGT 72701 30 96.7 35 .............................C TGAGGGTCACCCTGGAAGACGGGGGACGCGATACC 72636 30 96.7 33 .............................C GGGAGATCGTCGACCGACTTCCCGCAGTTCGTG 72573 30 96.7 36 .............................C GCCGACGACGGGAAGAACTTCGTCGACGGCGACGAC 72507 30 96.7 35 .............................C GTGTTCTGCCCGGAATGCTGGTTCGACCTATCCGA 72442 30 90.0 0 .....................AA......C | ========== ====== ====== ====== ============================== ===================================== ================== 59 30 99.4 35 CTTCCAGCAGGACCGTAGACGGGTTGAAGG # Left flank : CGAGAACTCACGCACGCCCTCGAGACTTGCCAAGGAGAGGTTCTCGCACGCCGAAGTCTCATCGATAGCGGATACGAAACCCGCGACGTCATCGTCGCACACACCCCGGTCGAGCGCAGAGCAACCAAGCGCCTCACAGAACTCCTCAGTGAGAATTCTCACGAACAAGCAGCGGGGTTCGAACTACTGAACCACCTCAGTGGTCTCCGTGTCTCCGTCCCTCTCAAGAGCCTCGAAGGAGTGACCACGATCACCCGAATCGACGGCCGACCACTCAACGACCCCGAAGGGGTCAACGTCCTCACCACCACCCGAACCGGAAACGGTCAATTCTACGATCTCGCCGACGGCGGCCTCAGAATCACCGACCTCATCAGCGACCGCTTCTCCATCTAATCACTTCTGTCGACCCCCCGGGGGTAGACCCAGAATTAGGGGTCGACAGAAACACTTGAGTGAATTCCCCGAAAAGAACCGTTCACGCCCGCATATCGGGCATC # Right flank : GAAACCGTCGGCTTCGACACAGTGCTGGGACCCCTGATAGCGCAAACGCCGAGTTGATTTAAGCACGTATCACCAACACCTCTGCACAGATGGCTCGTGTCGTCTACTATCACCATCCCCAAGCCGAGAACTTCTCGCTGAAGTATAGCTCGGCCTCGCAATCCGAGATTCTGTCCCGTCGTGAAGATTCAAACGGCGCGACGAAGCTCATCGGCTATCCGTTTGATACCCCAGTCTATGTCCTCTATGAGAGCGACACGGAGATCAAAGACGCAAACGAGGTTGATTTCGACCAGAAATGGCTCAGCGGTCGAATCGCCGAGCTTCCCCGGGAGGGGCAGGTCGTCGCGTTTCGATTAGTGGAATTACTCGAAGCGGCTGTAGACGTGAGAGAAGAAGAAGAGTTCCGCCTCTATAAGGAGTTTGAACCACAGAAGATTCGGCAGGCACTCGACCACGTCTCGTGGGGCGCACCACTCCCACAGGTCGCCGGTGAGCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCAGGACCGTAGACGGGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 86629-90422 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYV01000007.1 Haloferax sp. Atlit-16N P_contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 86629 30 100.0 34 .............................. CAGTTGTAGCGGCTGTCCTCGTAGGTGTAGGACC 86693 30 100.0 35 .............................. TGCCGGTGATGCACGTGATTTCTGGCGCAGCCATT 86758 30 100.0 35 .............................. GACTCGTGGGATAACTCGATGTCGGGGATTCCGAT 86823 30 100.0 35 .............................. CAGGGGCTCACAACCGTGCCGTTGCAGTCGCTAAT 86888 30 100.0 36 .............................. CGTCACGGACGCGTGACCGGGCGCTTCGAACGCCGC 86954 30 100.0 36 .............................. TGCCACTCGGTCGCGAGCGCCATCGGCGAGCACCGC 87020 30 100.0 35 .............................. CACTATGGCACGGAAGAACACGACTTCGTCTCCGG 87085 30 100.0 36 .............................. TGCACGGTTGACGACGTCCGCCGCGTCCTCCAAGAG 87151 30 100.0 37 .............................. TCCTCGGTCAGCCACGCCCACTTCCGAGAGTCCGAGA 87218 30 100.0 35 .............................. AGGGTGCCGGAGACACCACGCTGCTGGTCGGTCAC 87283 30 100.0 42 .............................. TGGGCGGCTGGTGGCTCCAGAAAGAGCAGTGCGAAACCTTCC 87355 30 100.0 35 .............................. CTCTCTTGGGGTGTGAAAAGACATTGAGGGTTGGG 87420 30 100.0 38 .............................. ATCCCCGAGGGCGGCGGTCTCGACGACACCGGGAACTT 87488 30 100.0 36 .............................. GACCTCTCGGTGCAGGAGTTCGACAACATGCTTGTT 87554 30 100.0 37 .............................. AGATCGCTGTTGTCGCCTTTCAGGTCAACCGAGCGTT 87621 30 100.0 37 .............................. CTGTTCCGACGGGCGTTCGCACAGGGGCAAACAAAGC 87688 30 100.0 38 .............................. TGTGTTCTCCGCGCACCCAAACGGTGACTTGTTGTCTC 87756 30 100.0 35 .............................. ACGCGCCGCTACAGACCTACCAAACGCCCCGCTGT 87821 30 100.0 36 .............................. TGCTTTTGCTGTGCCTCTGCATAGGCGTTGAGCGTA 87887 30 100.0 37 .............................. TCATCGACTGATCCCCCACCGATAAAAACGGGACGCG 87954 30 100.0 37 .............................. GATGCTACGTAACGACTGCTAAGTGGATTCATTCTAT 88021 30 100.0 33 .............................. GGTTGTCAGTCTCTTGAAGGTCACGGTATTCTT 88084 30 100.0 35 .............................. ACAGGACGGCGGCTAACCCCACTATGGGGAGTTTC 88149 30 100.0 36 .............................. GACCTCACCGACGAAATCGAACGGATCGACGACGAA 88215 30 100.0 34 .............................. AGGTTGTCATCTCATGTTGCCTGCCGTAGCCTGG 88279 30 100.0 36 .............................. AGCGAAATGCGGTTTATCAAGGGCCAACGGCAGCAA 88345 30 100.0 36 .............................. GGTCACTGCCATCACGACTCGATGCAGACTGACCCA 88411 30 100.0 35 .............................. TGGGCTGATGACGACCAGATCGACGGACAGGTTGT 88476 30 100.0 38 .............................. GAGATGCTCCTAACAGTTGAGACGGGGGCGATGACGTG 88544 30 100.0 37 .............................. GCTCGTGGAGGTGCGGCCATGATACTTACGGCGGCAT 88611 30 96.7 36 ......T....................... GTCCGTCCCGAGCGACCCCTGCGCGCCGAAGTCAAC 88677 30 100.0 35 .............................. GGGCATGGGAACACAACTCCCACGGCAGATGACCG 88742 30 100.0 36 .............................. ATGTTGAATCCGAGTTCGACGAACGTCCCGCCCGGA 88808 30 100.0 44 .............................. GTCCATGAAGTCGATGGTCGTCCGCGGCGTCCGGACGACCATGC 88882 30 100.0 35 .............................. AAGGCGTCTGGTGCGCTCACGTCGAGCGACCCGGT 88947 30 100.0 35 .............................. TCGTAGAGGTCGCCGGCGACCCACTTGCCGTCGTT 89012 30 100.0 37 .............................. AGGACAAGGACTATTATCTGACAACGTTTACCGTGTT 89079 30 100.0 36 .............................. GAACTACCTCGGAAATTCACCGTCGAAGCCAACGGC 89145 30 100.0 37 .............................. GACGGGAGCGCATGGGTCGACTTCAACTGATACGCTT 89212 30 100.0 35 .............................. ACCGACGAGGAGCTGATTCAGATGCTCCAAGAACT 89277 30 100.0 34 .............................. CAGCGGTGAGTGTTGCATCGGCGGCCGTCCCAGA 89341 30 100.0 36 .............................. ACCGCGAGTAGCACGAGTAGAGCTAACCCAAAGACG 89407 30 100.0 36 .............................. AATCGCCGGGCGCTGTATCTCGAAGTTGGTCCCCTT 89473 30 100.0 37 .............................. GCTGACGAACCCTAACTAATCATGTCCGACGCCAAAA 89540 30 100.0 36 .............................. TGCTTTTGCTGTGCCTCTGCATAGGCGTTGAGCGTA 89606 30 100.0 37 .............................. GTTAGTCGGTGCGGCGCAGCATCTCCTGAATAAACTC 89673 30 100.0 35 .............................. CCCGATAAGAAGAAGATAGCCACCAAGTGTGAGCC 89738 30 100.0 32 .............................. GTCGGAACAAGTTCGGAGCTTCCTGCGCGATT 89800 30 100.0 38 .............................. TCACAGTCACGCGGGACATTCGAGTGAACGGTCTCACT 89868 30 100.0 35 .............................. GAGCTGAACTCGACAGATTCGGTTAGTGATTTCGC 89933 30 100.0 35 .............................. GGGATTCCGTTCCCGTACGTCGCGCTCCGCAAGGG 89998 30 100.0 36 .............................. CGGTGTCGCTGGTTAAATTGGACATTCGTGACTCCG 90064 30 100.0 35 .............................. GACACTCGGCAGCGGCCGTCTTCGAAGAACGAACA 90129 30 100.0 37 .............................. AGGATTTCCCGGGATGAATCTTCTTTCCCCATCATCA 90196 30 100.0 33 .............................. ATCCGATTGCGAATGCCCATGTACACGAACGTC 90259 30 100.0 37 .............................. CTCGAAATCGACGTCGACCACACATCGACGACGGACA 90326 30 93.3 37 ............................AT CGCGTCGAAGCCCATCCCTGCTCCATCTTGACTTCCG 90393 30 93.3 0 ........A...............C..... | ========== ====== ====== ====== ============================== ============================================ ================== 58 30 99.7 36 CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Left flank : GCTTGACCGAACCGTCAATCACCCGCGCCTCAACCGGAACGTGAGCTACAAGACACTCGTCCAGACGGACGTCTATAGCCTCAAAAAACACATCCTCACCGGAGAACCATACCACGCAACGGAGCGCTGGTGGTAATGTTCGTCCTCATCGTCTACGACGTTCCCGCGGGACGGACTGAGCGCTACAAGAAAATGCTCCGCCGCCGCCTCGAACACGTTCAATACTCGGTCTTCTACGGTGACATCACGCCCGGGCTTCTCGTCGAGATCAAAAACGACATCGAAGATCTCCTCGAACCCGACGATTCGATCATCGTTTTCGAAGCCGAACGCGTCGGGGCCGTCGATCTCACCACGTACGGCGACACCGAAGACCCCGGAAGCCGCTTCACCTAACCACTTCTGTCGACCCCCCGGGGGTTGACCCAGAATTGGGGGTCGACAGAAACACTTGAGTGAATCCCCAAAGAAGAGCCGCTCACGCCCATAGATCGGGCATA # Right flank : CTGGGTTCTTGTCAAACGCCGTGGTCTTGCCCAACCATCTTGCTTCGTACTTGGCCTTCGCCTTGTCGTCGCTATTACCAACTACAAACGAGGAGACCAGGAAGTACGATCACCACAGTATGAGCAGAGTTCTATGACACCTCTAATTCAACCCATGATTCACCAACAACTGCTGGTGCTTCCGAGAATTACCCACAGTCGAAGCAAGATCACCGGCCTGAAAGATACCCCCTTTGCCTGTAGAATAGCCTCGGATTGTTCGTCAAAACTCACACCCTCACTTTTCCACCTAAGCGAGGTTATCCAGACGAACTCGCTATCCTACTCTGACTCAATTTTCGGAGCTGAGGCTAGTACACGAAATCAGGAGACAGAACGTAACATCAACCGCTGTCTCTCATACCTCCTCAGTTGCCTTCGCTCGTAGTACCTGAATCAAAGAATCAATGAATCAAAGAGTCTATGAAGTTGTTAATTTTGGAAACCAAGAGTTCAGGATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //